Variant report

Variant	rs16958178
Chromosome Location	chr15:34169130-34169131
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16958121	1.00[EUR][1000 genomes]
rs16958170	1.00[EUR][1000 genomes]
rs16958278	1.00[EUR][1000 genomes]
rs16958306	1.00[EUR][1000 genomes]
rs2052610	1.00[EUR][1000 genomes]
rs2052613	1.00[EUR][1000 genomes]
rs2052614	1.00[EUR][1000 genomes]
rs58374300	1.00[EUR][1000 genomes]
rs60091659	1.00[EUR][1000 genomes]
rs61172583	1.00[EUR][1000 genomes]
rs61247330	1.00[EUR][1000 genomes]
rs6495303	1.00[EUR][1000 genomes]
rs7165981	1.00[EUR][1000 genomes]
rs7168937	1.00[EUR][1000 genomes]
rs7170929	1.00[EUR][1000 genomes]
rs7171854	0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7172406	1.00[EUR][1000 genomes]
rs7177583	1.00[EUR][1000 genomes]
rs7178927	1.00[EUR][1000 genomes]
rs7181961	1.00[EUR][1000 genomes]
rs73372074	1.00[EUR][1000 genomes]
rs73372097	1.00[EUR][1000 genomes]
rs73373905	1.00[EUR][1000 genomes]
rs8024867	1.00[EUR][1000 genomes]
rs8026540	1.00[EUR][1000 genomes]
rs8026717	1.00[EUR][1000 genomes]
rs8034673	1.00[EUR][1000 genomes]
rs8037644	1.00[EUR][1000 genomes]
rs8038636	1.00[EUR][1000 genomes]
rs8041144	1.00[EUR][1000 genomes]
rs8041406	1.00[EUR][1000 genomes]
rs8041930	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34155600-34169600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:34158600-34172600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:34158800-34169200	Weak transcription	Fetal Intestine Large	intestine
4	chr15:34159000-34172600	Weak transcription	Aorta	Aorta
5	chr15:34159600-34169600	Weak transcription	Liver	Liver
6	chr15:34159800-34169400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr15:34160000-34199400	Weak transcription	Left Ventricle	heart
8	chr15:34164400-34186400	Weak transcription	Right Atrium	heart
9	chr15:34164600-34169600	Weak transcription	HSMMtube	muscle
10	chr15:34164600-34173200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr15:34165200-34172400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:34165200-34172400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr15:34167600-34169200	Weak transcription	Adipose Nuclei	Adipose
14	chr15:34168200-34176000	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links