Variant report

Variant	rs7181961
Chromosome Location	chr15:34168311-34168312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10519889	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs11854992	1.00[CEU][hapmap]
rs1529542	1.00[CEU][hapmap]
rs16957454	1.00[CEU][hapmap]
rs16958077	1.00[CEU][hapmap]
rs16958121	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16958170	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958178	1.00[EUR][1000 genomes]
rs16958202	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs16958222	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs16958228	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs16958235	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs16958242	0.85[AFR][1000 genomes]
rs16958247	0.88[YRI][hapmap]
rs16958278	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958306	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2052610	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2052613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2052614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4780186	1.00[CEU][hapmap]
rs57308544	0.93[AFR][1000 genomes]
rs58374300	1.00[EUR][1000 genomes]
rs60091659	1.00[EUR][1000 genomes]
rs60933918	0.93[AFR][1000 genomes]
rs61172583	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61247330	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495303	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6495332	1.00[CEU][hapmap]
rs6495403	1.00[CEU][hapmap]
rs7163545	1.00[YRI][hapmap]
rs7165072	0.93[AFR][1000 genomes]
rs7165981	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7168937	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7170693	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7170929	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7171854	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7172238	1.00[CEU][hapmap]
rs7172406	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7177583	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7178927	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7183165	1.00[CEU][hapmap]
rs73372074	1.00[EUR][1000 genomes]
rs73372097	1.00[EUR][1000 genomes]
rs73373905	1.00[EUR][1000 genomes]
rs73375714	0.92[AFR][1000 genomes]
rs8024867	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8026540	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8026717	1.00[CEU][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8034673	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8037644	1.00[EUR][1000 genomes]
rs8038636	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8041144	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8041406	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8041930	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34142400-34168600	Weak transcription	Esophagus	oesophagus
2	chr15:34155600-34169600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr15:34158600-34168800	Weak transcription	Gastric	stomach
4	chr15:34158600-34172600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:34158800-34169200	Weak transcription	Fetal Intestine Large	intestine
6	chr15:34159000-34172600	Weak transcription	Aorta	Aorta
7	chr15:34159600-34168400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:34159600-34168600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr15:34159600-34169600	Weak transcription	Liver	Liver
10	chr15:34159800-34169400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr15:34160000-34168800	Weak transcription	Ovary	ovary
12	chr15:34160000-34199400	Weak transcription	Left Ventricle	heart
13	chr15:34164400-34186400	Weak transcription	Right Atrium	heart
14	chr15:34164600-34169600	Weak transcription	HSMMtube	muscle
15	chr15:34164600-34173200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr15:34165200-34172400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr15:34165200-34172400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr15:34167600-34169200	Weak transcription	Adipose Nuclei	Adipose
19	chr15:34168200-34176000	Weak transcription	Primary T cells from cord blood	blood

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