Variant report

Variant	rs16957454
Chromosome Location	chr15:33974031-33974032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1025580	1.00[CEU][hapmap]
rs1529542	1.00[CEU][hapmap]
rs1560967	1.00[CEU][hapmap]
rs16957550	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16958077	1.00[CEU][hapmap]
rs16958121	1.00[CEU][hapmap]
rs2572161	1.00[CEU][hapmap]
rs4780186	1.00[CEU][hapmap]
rs6495303	1.00[CEU][hapmap]
rs7163719	1.00[CEU][hapmap]
rs7171854	1.00[CEU][hapmap]
rs7172238	1.00[CEU][hapmap]
rs7172406	1.00[CEU][hapmap]
rs7180908	1.00[CEU][hapmap]
rs7181961	1.00[CEU][hapmap]
rs8026717	1.00[CEU][hapmap]
rs8031942	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8039172	1.00[CEU][hapmap]
rs8041406	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33933000-33976000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:33957800-33975800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:33957800-33992000	Weak transcription	Brain Anterior Caudate	brain
4	chr15:33966800-33990000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:33971600-33978200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr15:33972400-33974200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr15:33973400-33974200	Enhancers	Psoas Muscle	Psoas
8	chr15:33973400-33982600	Weak transcription	Fetal Heart	heart
9	chr15:33973400-33988400	Weak transcription	Aorta	Aorta
10	chr15:33973600-33976000	Weak transcription	Fetal Muscle Leg	muscle
11	chr15:33973800-33988400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:33974000-33974200	Enhancers	Brain Substantia Nigra	brain
13	chr15:33974000-33974200	Bivalent Enhancer	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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