Variant report

Variant	rs8039172
Chromosome Location	chr15:33878078-33878079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1025580	1.00[CEU][hapmap]
rs12324553	1.00[CEU][hapmap]
rs1560967	1.00[CEU][hapmap]
rs16957454	1.00[CEU][hapmap]
rs16971191	1.00[CEU][hapmap]
rs16971194	1.00[CEU][hapmap]
rs2572161	1.00[CEU][hapmap]
rs34565506	1.00[AMR][1000 genomes]
rs56274541	1.00[AMR][1000 genomes]
rs6495092	1.00[CEU][hapmap]
rs7163719	1.00[CEU][hapmap]
rs7180908	1.00[CEU][hapmap]
rs74005692	1.00[AMR][1000 genomes]
rs74005693	1.00[AMR][1000 genomes]
rs74005694	1.00[AMR][1000 genomes]
rs8027137	1.00[CEU][hapmap]
rs8037408	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv431382	chr15:33873751-33915088	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33858000-33921200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:33858600-33895200	Weak transcription	Fetal Muscle Leg	muscle
3	chr15:33859200-33923200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:33872200-33878400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:33873000-33923400	Weak transcription	Brain Anterior Caudate	brain
6	chr15:33873200-33878400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:33873200-33879000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:33873800-33878600	Weak transcription	NHEK	skin
9	chr15:33873800-33879000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:33873800-33879000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:33873800-33879400	Weak transcription	NHDF-Ad	bronchial
12	chr15:33873800-33895200	Weak transcription	Aorta	Aorta
13	chr15:33874000-33879200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr15:33874000-33879800	Weak transcription	HMEC	breast
15	chr15:33874000-33880200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:33874000-33884800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr15:33874200-33880000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:33876600-33878600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr15:33876800-33880200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:33877000-33878800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:33877400-33878200	Weak transcription	Ovary	ovary
22	chr15:33877400-33879200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:33877400-33880000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:33877600-33879600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:33877600-33881000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr15:33877800-33879600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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