Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1025580	1.00[CEU][hapmap]
rs10438371	1.00[CEU][hapmap]
rs10438372	1.00[CEU][hapmap]
rs11855396	1.00[EUR][1000 genomes]
rs12324553	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1560967	1.00[CEU][hapmap]
rs16970272	1.00[CEU][hapmap]
rs16970947	1.00[EUR][1000 genomes]
rs16971041	1.00[EUR][1000 genomes]
rs16971191	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16971229	1.00[EUR][1000 genomes]
rs2572161	1.00[CEU][hapmap]
rs59051362	1.00[EUR][1000 genomes]
rs6495092	1.00[CEU][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7161916	1.00[CEU][hapmap]
rs7163719	1.00[CEU][hapmap]
rs7167835	1.00[EUR][1000 genomes]
rs7180908	1.00[CEU][hapmap]
rs7181623	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74005624	1.00[EUR][1000 genomes]
rs8027137	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8039172	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33741600-33765400	Weak transcription	Fetal Muscle Leg	muscle
2	chr15:33744400-33750400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr15:33744400-33750400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:33744600-33750400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:33747600-33750400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:33747600-33752200	Weak transcription	Fetal Kidney	kidney
7	chr15:33748400-33749000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr15:33748400-33749000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr15:33748600-33749000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr15:33748600-33749000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr15:33748800-33749000	Enhancers	Brain Anterior Caudate	brain
12	chr15:33748800-33749000	Enhancers	Esophagus	oesophagus

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