Variant report

Variant	rs10438371
Chromosome Location	chr15:33671524-33671525
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1025580	1.00[CEU][hapmap]
rs10438372	1.00[CEU][hapmap]
rs11852397	1.00[AMR][1000 genomes]
rs11856285	1.00[AMR][1000 genomes]
rs12324553	1.00[CEU][hapmap]
rs1560967	1.00[CEU][hapmap]
rs16970272	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16971191	1.00[CEU][hapmap]
rs16971194	1.00[CEU][hapmap]
rs2572161	1.00[CEU][hapmap]
rs55639824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6495092	1.00[CEU][hapmap]
rs7161916	1.00[CEU][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7163719	1.00[CEU][hapmap]
rs7180908	1.00[CEU][hapmap]
rs74007943	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8027137	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832963	chr15:33514798-33712442	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv568919	chr15:33638335-33736683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33644600-33701600	Weak transcription	Aorta	Aorta
2	chr15:33670200-33672000	Weak transcription	Fetal Muscle Leg	muscle
3	chr15:33671400-33673000	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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