Variant report

Variant	rs16970272
Chromosome Location	chr15:33663532-33663533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1025580	1.00[CEU][hapmap]
rs10438371	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10438372	1.00[CEU][hapmap]
rs11852397	1.00[AMR][1000 genomes]
rs11856285	1.00[AMR][1000 genomes]
rs12324553	1.00[CEU][hapmap]
rs1560967	1.00[CEU][hapmap]
rs16971191	1.00[CEU][hapmap]
rs16971194	1.00[CEU][hapmap]
rs2572161	1.00[CEU][hapmap]
rs55639824	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6495092	1.00[CEU][hapmap]
rs7161916	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7163719	1.00[CEU][hapmap]
rs7180908	1.00[CEU][hapmap]
rs74007943	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8027137	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832963	chr15:33514798-33712442	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv568919	chr15:33638335-33736683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33644600-33701600	Weak transcription	Aorta	Aorta
2	chr15:33650600-33666800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:33661200-33666400	Weak transcription	Fetal Heart	heart
4	chr15:33662800-33664200	Enhancers	Fetal Brain Male	brain
5	chr15:33662800-33666200	Weak transcription	Fetal Stomach	stomach
6	chr15:33663000-33664200	Enhancers	Fetal Brain Female	brain
7	chr15:33663400-33664000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr15:33663400-33664000	Enhancers	Brain Germinal Matrix	brain
9	chr15:33663400-33664400	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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