Variant report

Variant	rs7180908
Chromosome Location	chr15:33851250-33851251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10152838	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1025580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs1030771	0.84[YRI][hapmap]
rs10438371	1.00[CEU][hapmap]
rs10438372	1.00[CEU][hapmap]
rs11634054	0.82[YRI][hapmap]
rs11857690	0.86[YRI][hapmap];0.83[AFR][1000 genomes]
rs12324553	1.00[CEU][hapmap]
rs1435121	0.81[YRI][hapmap]
rs1435123	0.82[YRI][hapmap]
rs1560967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16957454	1.00[CEU][hapmap]
rs16970272	1.00[CEU][hapmap]
rs16971191	1.00[CEU][hapmap]
rs16971194	1.00[CEU][hapmap]
rs2060453	0.86[YRI][hapmap]
rs2572161	1.00[CEU][hapmap]
rs3794576	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs3794580	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3816092	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3829478	0.85[YRI][hapmap]
rs4503763	0.82[YRI][hapmap]
rs6495092	1.00[CEU][hapmap]
rs6495169	0.84[YRI][hapmap]
rs6495170	0.86[YRI][hapmap];0.86[AFR][1000 genomes]
rs7161916	1.00[CEU][hapmap]
rs7163719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164455	0.82[YRI][hapmap]
rs7169363	0.84[YRI][hapmap]
rs7174065	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7177351	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7179429	0.80[AFR][1000 genomes]
rs744776	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8025449	0.84[YRI][hapmap]
rs8027137	1.00[CEU][hapmap]
rs8039172	1.00[CEU][hapmap]
rs892774	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs967092	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9744361	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:33833200-33858400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr15:33841600-33857200	Weak transcription	Fetal Brain Female	brain
4	chr15:33844800-33860200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:33845400-33855200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr15:33845600-33851400	Weak transcription	Brain Anterior Caudate	brain
7	chr15:33846400-33857600	Weak transcription	Fetal Muscle Leg	muscle
8	chr15:33846400-33872000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:33848600-33853600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:33850800-33852600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr15:33851000-33851800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr15:33851000-33851800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr15:33851000-33851800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:33851000-33851800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:33851000-33852600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr15:33851000-33852800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr15:33851000-33852800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr15:33851000-33854400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:33851000-33854600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr15:33851200-33851400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:33851200-33854000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr15:33851200-33854200	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr15:33851200-33854400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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