Variant report

Variant	rs9744361
Chromosome Location	chr15:33857949-33857950
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33857269..33859324-chr15:33862505..33864558,2	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1025578	0.81[AFR][1000 genomes]
rs1025579	0.81[AFR][1000 genomes]
rs1030767	0.92[AFR][1000 genomes]
rs1030769	0.94[AFR][1000 genomes]
rs1030771	0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs11630933	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs11634054	0.89[ASW][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs11637818	0.87[AFR][1000 genomes]
rs11853587	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11853872	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[ASN][1000 genomes]
rs11854531	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11855374	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11857690	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.81[LWK][hapmap];0.88[MEX][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11857828	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11858462	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12899789	0.96[YRI][hapmap];0.92[AFR][1000 genomes]
rs12906915	1.00[CHB][hapmap]
rs12910838	1.00[CHB][hapmap]
rs12913333	1.00[CHB][hapmap]
rs12914919	1.00[CHB][hapmap]
rs1369305	0.83[ASW][hapmap]
rs1435102	0.83[ASW][hapmap]
rs1435120	0.96[AFR][1000 genomes]
rs1435121	0.95[LWK][hapmap];0.97[MKK][hapmap];0.87[AFR][1000 genomes]
rs1435123	0.89[ASW][hapmap];0.98[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs1435124	0.96[AFR][1000 genomes]
rs1529845	0.81[AFR][1000 genomes]
rs1529847	0.80[AFR][1000 genomes]
rs1529848	0.83[ASW][hapmap];0.80[LWK][hapmap];0.81[AFR][1000 genomes]
rs1529850	0.81[AFR][1000 genomes]
rs1560965	0.81[AFR][1000 genomes]
rs1579584	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594955	0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs16972314	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16972617	1.00[CHB][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17236035	1.00[CHB][hapmap]
rs1865496	0.81[AFR][1000 genomes]
rs1865499	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs2060453	0.89[ASW][hapmap];0.91[LWK][hapmap];0.89[MKK][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs2164250	0.91[AFR][1000 genomes]
rs2304379	0.96[AFR][1000 genomes]
rs2339306	0.96[AFR][1000 genomes]
rs2339309	1.00[YRI][hapmap]
rs2459471	1.00[CHB][hapmap]
rs2596195	1.00[CHB][hapmap]
rs2676018	1.00[CHB][hapmap]
rs2676019	1.00[CHB][hapmap]
rs2676049	1.00[CHB][hapmap]
rs2676061	1.00[CHB][hapmap]
rs28803605	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28847986	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3794580	0.84[AFR][1000 genomes]
rs3816092	0.94[ASW][hapmap];0.81[AFR][1000 genomes]
rs3829476	0.87[AFR][1000 genomes]
rs3829477	0.87[AFR][1000 genomes]
rs3829478	0.95[LWK][hapmap];0.87[AFR][1000 genomes]
rs4503763	0.89[ASW][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs4779621	0.90[AFR][1000 genomes]
rs4780123	0.81[AFR][1000 genomes]
rs4780127	0.89[AFR][1000 genomes]
rs6495169	1.00[CHB][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6495170	1.00[CHB][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6495179	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7164455	0.89[ASW][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs7164680	1.00[CHB][hapmap]
rs7169363	1.00[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7170881	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs7170917	1.00[ASN][1000 genomes]
rs7172763	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs7176795	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7177433	1.00[CHB][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7180908	0.82[YRI][hapmap]
rs721667	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs744776	0.83[ASW][hapmap]
rs8023510	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs8025449	1.00[CHB][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8033477	0.96[YRI][hapmap];0.95[AFR][1000 genomes]
rs8034176	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8035838	1.00[CHB][hapmap]
rs8039434	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8040446	1.00[ASN][1000 genomes]
rs8041153	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9302270	0.81[AFR][1000 genomes]
rs967092	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:33833200-33858400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr15:33844800-33860200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:33846400-33872000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:33855200-33858000	Strong transcription	Stomach Smooth Muscle	stomach
6	chr15:33857200-33858400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr15:33857600-33858600	Strong transcription	Fetal Muscle Leg	muscle
8	chr15:33857800-33858000	Weak transcription	Aorta	Aorta
9	chr15:33857800-33858400	ZNF genes & repeats	Brain Anterior Caudate	brain

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