Variant report

Variant	rs16972314
Chromosome Location	chr15:33854737-33854738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1025580	0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs11853587	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11853872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854531	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855374	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857690	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857828	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858462	1.00[ASN][1000 genomes]
rs12906915	1.00[CHB][hapmap]
rs12910838	1.00[CHB][hapmap]
rs12913333	1.00[CHB][hapmap]
rs12914919	1.00[CHB][hapmap]
rs1579584	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16972617	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17236035	1.00[CHB][hapmap]
rs2077268	0.89[CEU][hapmap]
rs2459471	1.00[CHB][hapmap]
rs2596195	1.00[CHB][hapmap]
rs2676018	1.00[CHB][hapmap]
rs2676019	1.00[CHB][hapmap]
rs2676049	1.00[CHB][hapmap]
rs2676061	1.00[CHB][hapmap]
rs28803605	1.00[ASN][1000 genomes]
rs28847986	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794576	0.89[YRI][hapmap]
rs6495169	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495170	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495179	1.00[ASN][1000 genomes]
rs6495180	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7163719	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs7164680	1.00[CHB][hapmap]
rs7169363	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170917	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176795	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177351	0.84[YRI][hapmap]
rs7177433	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748298	0.89[CEU][hapmap]
rs8023510	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025449	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8034176	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8035838	1.00[CHB][hapmap]
rs8039434	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040446	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041153	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9744361	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:33833200-33858400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr15:33841600-33857200	Weak transcription	Fetal Brain Female	brain
4	chr15:33844800-33860200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:33845400-33855200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr15:33846400-33857600	Weak transcription	Fetal Muscle Leg	muscle
7	chr15:33846400-33872000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:33851800-33856800	Weak transcription	Aorta	Aorta
9	chr15:33851800-33857800	Weak transcription	Brain Anterior Caudate	brain
10	chr15:33853600-33856800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:33853800-33857400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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