Variant report

Variant	rs28803605
Chromosome Location	chr15:33868740-33868741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11633042	0.93[AFR][1000 genomes]
rs11853587	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11853872	1.00[ASN][1000 genomes]
rs11854531	1.00[ASN][1000 genomes]
rs11855374	1.00[ASN][1000 genomes]
rs11857690	1.00[ASN][1000 genomes]
rs11857828	1.00[ASN][1000 genomes]
rs11858462	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1435117	0.96[AFR][1000 genomes]
rs1435118	0.96[AFR][1000 genomes]
rs1579584	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16972314	1.00[ASN][1000 genomes]
rs16972617	1.00[ASN][1000 genomes]
rs28847986	1.00[ASN][1000 genomes]
rs620150	0.95[AFR][1000 genomes]
rs6495169	1.00[ASN][1000 genomes]
rs6495170	1.00[ASN][1000 genomes]
rs6495179	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495180	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs680851	0.96[AFR][1000 genomes]
rs683553	0.95[AFR][1000 genomes]
rs7167970	0.94[AFR][1000 genomes]
rs7169123	0.94[AFR][1000 genomes]
rs7169363	1.00[ASN][1000 genomes]
rs7170917	1.00[ASN][1000 genomes]
rs7176795	1.00[ASN][1000 genomes]
rs7177433	1.00[ASN][1000 genomes]
rs8023510	1.00[ASN][1000 genomes]
rs8025449	1.00[ASN][1000 genomes]
rs8034176	1.00[ASN][1000 genomes]
rs8039434	1.00[ASN][1000 genomes]
rs8040446	1.00[ASN][1000 genomes]
rs8041153	1.00[ASN][1000 genomes]
rs9635321	0.94[AFR][1000 genomes]
rs9744361	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:33846400-33872000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:33858000-33921200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:33858600-33895200	Weak transcription	Fetal Muscle Leg	muscle
5	chr15:33859200-33923200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:33866600-33871200	Weak transcription	Ovary	ovary
7	chr15:33868400-33868800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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