Variant report

Variant	rs6495169
Chromosome Location	chr15:33853227-33853228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1025578	0.82[AFR][1000 genomes]
rs1025579	0.82[AFR][1000 genomes]
rs1025581	0.81[AFR][1000 genomes]
rs1030767	0.94[AFR][1000 genomes]
rs1030769	0.92[AFR][1000 genomes]
rs1030771	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs11630933	0.94[YRI][hapmap];0.91[AFR][1000 genomes]
rs11634054	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs11637818	0.82[AFR][1000 genomes]
rs11853587	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11853872	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854531	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855374	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857690	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857828	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858462	1.00[ASN][1000 genomes]
rs12899789	0.90[YRI][hapmap];0.87[AFR][1000 genomes]
rs12906915	1.00[CHB][hapmap]
rs12910838	1.00[CHB][hapmap]
rs12913333	1.00[CHB][hapmap]
rs12914919	1.00[CHB][hapmap]
rs1435120	0.91[AFR][1000 genomes]
rs1435121	0.82[AFR][1000 genomes]
rs1435123	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs1435124	0.91[AFR][1000 genomes]
rs1529845	0.82[AFR][1000 genomes]
rs1529847	0.81[AFR][1000 genomes]
rs1529848	0.82[AFR][1000 genomes]
rs1529850	0.82[AFR][1000 genomes]
rs1560965	0.82[AFR][1000 genomes]
rs1579584	1.00[CHB][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1594955	0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs16972314	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16972617	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17236035	1.00[CHB][hapmap]
rs1865496	0.82[AFR][1000 genomes]
rs1865499	0.94[YRI][hapmap];0.91[AFR][1000 genomes]
rs2060453	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs2077268	1.00[CEU][hapmap]
rs2164250	0.86[AFR][1000 genomes]
rs2304379	0.91[AFR][1000 genomes]
rs2339306	0.91[AFR][1000 genomes]
rs2339309	0.93[YRI][hapmap]
rs2459471	1.00[CHB][hapmap]
rs2596195	1.00[CHB][hapmap]
rs2676018	1.00[CHB][hapmap]
rs2676019	1.00[CHB][hapmap]
rs2676049	1.00[CHB][hapmap]
rs2676061	1.00[CHB][hapmap]
rs28803605	1.00[ASN][1000 genomes]
rs28847986	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794580	0.86[AFR][1000 genomes]
rs3816092	0.82[AFR][1000 genomes]
rs3829476	0.82[AFR][1000 genomes]
rs3829477	0.82[AFR][1000 genomes]
rs3829478	0.82[AFR][1000 genomes]
rs4503763	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs4779621	0.84[AFR][1000 genomes]
rs4780123	0.82[AFR][1000 genomes]
rs4780127	0.87[AFR][1000 genomes]
rs6495170	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495179	1.00[ASN][1000 genomes]
rs6495180	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7164455	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs7164680	1.00[CHB][hapmap]
rs7169363	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170881	0.93[YRI][hapmap];0.90[AFR][1000 genomes]
rs7170917	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7172763	0.93[YRI][hapmap];0.90[AFR][1000 genomes]
rs7176795	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177433	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179429	0.81[AFR][1000 genomes]
rs7180908	0.84[YRI][hapmap]
rs721667	0.93[YRI][hapmap];0.91[AFR][1000 genomes]
rs748298	1.00[CEU][hapmap]
rs8023510	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8033477	0.91[YRI][hapmap];0.90[AFR][1000 genomes]
rs8034176	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8035838	1.00[CHB][hapmap]
rs8039434	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040446	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041153	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9302270	0.82[AFR][1000 genomes]
rs967092	0.86[AFR][1000 genomes]
rs9744361	1.00[CHB][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:33833200-33858400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr15:33841600-33857200	Weak transcription	Fetal Brain Female	brain
4	chr15:33844800-33860200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:33845400-33855200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr15:33846400-33857600	Weak transcription	Fetal Muscle Leg	muscle
7	chr15:33846400-33872000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:33848600-33853600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:33851000-33854400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:33851000-33854600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr15:33851200-33854000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr15:33851200-33854200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr15:33851200-33854400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr15:33851800-33853400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr15:33851800-33853400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr15:33851800-33856800	Weak transcription	Aorta	Aorta
17	chr15:33851800-33857800	Weak transcription	Brain Anterior Caudate	brain
18	chr15:33852600-33853400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr15:33852600-33853600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr15:33853200-33853600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr15:33853200-33854000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr15:33853200-33854200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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