Variant report

Variant	rs3816092
Chromosome Location	chr15:33836055-33836056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10152838	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1025578	0.91[AFR][1000 genomes]
rs1025579	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs1025580	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1025581	0.94[AFR][1000 genomes]
rs11634054	0.84[ASW][hapmap]
rs11857690	0.94[ASW][hapmap]
rs12909241	0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs1369305	0.89[ASW][hapmap];0.93[LWK][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs1369307	0.82[EUR][1000 genomes]
rs1435099	0.82[LWK][hapmap];0.82[YRI][hapmap]
rs1435101	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs1435102	0.89[ASW][hapmap];0.91[LWK][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs1435123	0.84[ASW][hapmap]
rs1529845	0.93[YRI][hapmap];0.91[AFR][1000 genomes]
rs1529847	0.92[AFR][1000 genomes]
rs1529848	0.89[ASW][hapmap];0.98[LWK][hapmap];0.88[MKK][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs1529850	0.91[AFR][1000 genomes]
rs1560965	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs1560967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17236168	0.82[EUR][1000 genomes]
rs17817262	0.81[CEU][hapmap];0.83[TSI][hapmap];0.86[EUR][1000 genomes]
rs17817268	0.82[EUR][1000 genomes]
rs1865496	0.96[YRI][hapmap];0.93[AFR][1000 genomes]
rs2060453	0.84[ASW][hapmap];0.82[LWK][hapmap];0.82[MKK][hapmap]
rs2217806	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs3794576	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3794580	0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4503763	0.84[ASW][hapmap]
rs4779620	0.86[AFR][1000 genomes]
rs4780123	0.91[AFR][1000 genomes]
rs56351250	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs59733362	0.86[EUR][1000 genomes]
rs6495166	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6495169	0.82[AFR][1000 genomes]
rs7163719	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7164455	0.84[ASW][hapmap]
rs7165400	0.82[AFR][1000 genomes]
rs7174065	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7177351	1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7178813	0.92[EUR][1000 genomes]
rs7179429	0.86[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7180908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7183338	0.92[EUR][1000 genomes]
rs744776	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.85[MKK][hapmap];0.83[TSI][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8023510	0.88[ASW][hapmap]
rs8023659	1.00[MEX][hapmap]
rs8025449	0.82[AFR][1000 genomes]
rs8030964	0.81[CEU][hapmap];0.92[EUR][1000 genomes]
rs8041153	0.88[ASW][hapmap]
rs8041171	0.81[CEU][hapmap];0.92[EUR][1000 genomes]
rs892774	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9302270	0.93[AFR][1000 genomes]
rs9302271	0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs967092	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9744361	0.94[ASW][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33794800-33836200	Weak transcription	Aorta	Aorta
2	chr15:33818400-33840800	Weak transcription	Fetal Muscle Leg	muscle
3	chr15:33821800-33836200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:33823800-33844000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:33825600-33837800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:33826600-33847800	Weak transcription	Fetal Stomach	stomach
7	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr15:33828400-33838000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:33832600-33839800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:33833200-33858400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr15:33834600-33845000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:33834600-33850000	Weak transcription	Colon Smooth Muscle	Colon
13	chr15:33835800-33836200	Weak transcription	Brain Anterior Caudate	brain
14	chr15:33835800-33838600	Weak transcription	Duodenum Smooth Muscle	Duodenum

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