Variant report

Variant	rs3794576
Chromosome Location	chr15:33845003-33845004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10152838	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1025580	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11853872	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1560967	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16972314	0.89[YRI][hapmap]
rs3794580	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3816092	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs56351250	1.00[ASN][1000 genomes]
rs6495166	0.95[ASN][1000 genomes]
rs7163719	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7174065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7177351	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179429	0.88[ASN][1000 genomes]
rs7180908	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs744776	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8034176	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs892774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs967092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33826600-33847800	Weak transcription	Fetal Stomach	stomach
2	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:33833200-33858400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:33834600-33850000	Weak transcription	Colon Smooth Muscle	Colon
5	chr15:33839200-33847800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:33840600-33845600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:33841600-33857200	Weak transcription	Fetal Brain Female	brain
8	chr15:33843200-33845400	Strong transcription	Stomach Smooth Muscle	stomach
9	chr15:33843200-33845600	Enhancers	Brain Anterior Caudate	brain
10	chr15:33844000-33845600	Enhancers	Brain Germinal Matrix	brain
11	chr15:33844200-33845400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr15:33844400-33845200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr15:33844400-33845200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:33844600-33846400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:33844800-33860200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:33845000-33845800	Weak transcription	Fetal Muscle Leg	muscle
17	chr15:33845000-33846400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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