Variant report

Variant	rs11853872
Chromosome Location	chr15:33858935-33858936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33857269..33859324-chr15:33862505..33864558,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1025580	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs11853587	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11854531	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855374	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857828	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858462	1.00[ASN][1000 genomes]
rs12906915	1.00[CHB][hapmap]
rs12910838	1.00[CHB][hapmap]
rs12913333	1.00[CHB][hapmap]
rs12914919	1.00[CHB][hapmap]
rs1579584	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16972314	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16972617	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17236035	1.00[CHB][hapmap]
rs2077268	0.89[CEU][hapmap];0.86[MEX][hapmap]
rs2459471	1.00[CHB][hapmap]
rs2596195	1.00[CHB][hapmap]
rs2676018	1.00[CHB][hapmap]
rs2676019	1.00[CHB][hapmap]
rs2676049	1.00[CHB][hapmap]
rs2676061	1.00[CHB][hapmap]
rs28803605	1.00[ASN][1000 genomes]
rs28847986	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794576	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6495169	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495170	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495179	1.00[ASN][1000 genomes]
rs6495180	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[ASN][1000 genomes]
rs7163719	1.00[LWK][hapmap];0.85[MKK][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes]
rs7164680	1.00[CHB][hapmap]
rs7169363	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170917	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176795	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177351	0.92[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs7177433	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748298	0.89[CEU][hapmap];0.86[MEX][hapmap];0.81[EUR][1000 genomes]
rs8023510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025449	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8034176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8035838	1.00[CHB][hapmap]
rs8039434	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040446	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9744361	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:33844800-33860200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr15:33846400-33872000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:33858000-33921200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:33858400-33859200	Strong transcription	Fetal Muscle Trunk	muscle
6	chr15:33858400-33859800	Weak transcription	Brain Anterior Caudate	brain
7	chr15:33858400-33860200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:33858600-33895200	Weak transcription	Fetal Muscle Leg	muscle
9	chr15:33858800-33859200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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