Variant report

Variant	rs8041153
Chromosome Location	chr15:33872143-33872144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33870139..33872552-chr17:56728731..56731471,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1030767	0.81[AFR][1000 genomes]
rs1030771	0.89[YRI][hapmap]
rs11630933	0.93[YRI][hapmap]
rs11634054	0.84[ASW][hapmap];0.93[YRI][hapmap]
rs11853587	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11853872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855374	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857690	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.88[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857828	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858462	1.00[ASN][1000 genomes]
rs12899789	0.89[YRI][hapmap]
rs12906915	1.00[CHB][hapmap]
rs12910838	1.00[CHB][hapmap]
rs12913333	1.00[CHB][hapmap]
rs12914919	1.00[CHB][hapmap]
rs1435123	0.84[ASW][hapmap];0.93[YRI][hapmap]
rs1579584	1.00[CHB][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1594955	0.89[YRI][hapmap]
rs16972314	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16972617	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17236035	1.00[CHB][hapmap]
rs1865499	0.93[YRI][hapmap]
rs2060453	0.84[ASW][hapmap];0.89[YRI][hapmap]
rs2077268	0.89[CEU][hapmap]
rs2339309	0.92[YRI][hapmap]
rs2459471	1.00[CHB][hapmap]
rs2596195	1.00[CHB][hapmap]
rs2676018	1.00[CHB][hapmap]
rs2676019	1.00[CHB][hapmap]
rs2676049	1.00[CHB][hapmap]
rs2676061	1.00[CHB][hapmap]
rs28803605	1.00[ASN][1000 genomes]
rs28847986	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3816092	0.88[ASW][hapmap]
rs4503763	0.84[ASW][hapmap];0.93[YRI][hapmap]
rs6495169	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495170	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495179	1.00[ASN][1000 genomes]
rs6495180	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.89[MEX][hapmap];1.00[ASN][1000 genomes]
rs7164455	0.84[ASW][hapmap];0.93[YRI][hapmap]
rs7164680	1.00[CHB][hapmap]
rs7169363	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170881	0.96[YRI][hapmap]
rs7170917	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7172763	0.92[YRI][hapmap]
rs7176795	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177433	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs721667	0.93[YRI][hapmap]
rs748298	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs8023510	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8025449	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8033477	0.90[YRI][hapmap]
rs8034176	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8035838	1.00[CHB][hapmap]
rs8039434	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040446	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9744361	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:33858000-33921200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr15:33858600-33895200	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:33859200-33923200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr15:33871400-33872200	Weak transcription	Ovary	ovary
6	chr15:33872000-33872200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:33872000-33872400	Enhancers	Placenta Amnion	Placenta Amnion
8	chr15:33872000-33873200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:33872000-33874600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links