Variant report

Variant	rs2459471
Chromosome Location	chr15:33706488-33706489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33705823..33709150-chr15:33710958..33713846,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11853587	1.00[CHB][hapmap]
rs11853872	1.00[CHB][hapmap]
rs11857690	1.00[CHB][hapmap]
rs12906915	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12910838	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12913333	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs12914919	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1579584	1.00[CHB][hapmap]
rs16970702	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16972314	1.00[CHB][hapmap]
rs16972617	1.00[CHB][hapmap]
rs17236035	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17817170	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596195	1.00[CHB][hapmap]
rs2596216	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676018	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676019	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676043	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676045	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676049	1.00[CHB][hapmap]
rs2676050	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676061	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28566012	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28687371	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34033525	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34299908	1.00[ASN][1000 genomes]
rs34566980	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35134950	1.00[ASN][1000 genomes]
rs35665563	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35784031	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36061049	1.00[ASN][1000 genomes]
rs6495169	1.00[CHB][hapmap]
rs6495170	1.00[CHB][hapmap]
rs6495180	1.00[CHB][hapmap]
rs71462865	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71462866	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71462867	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7164680	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7169363	1.00[CHB][hapmap]
rs7175746	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177433	1.00[CHB][hapmap]
rs8023510	1.00[CHB][hapmap]
rs8025449	1.00[CHB][hapmap]
rs8034176	1.00[CHB][hapmap]
rs8035838	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8041153	1.00[CHB][hapmap]
rs9744361	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832963	chr15:33514798-33712442	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv568919	chr15:33638335-33736683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33705200-33706600	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr15:33705600-33707600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr15:33706000-33707400	Enhancers	NHEK	skin
4	chr15:33706000-33711400	Weak transcription	Fetal Muscle Leg	muscle
5	chr15:33706200-33706800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:33706400-33707200	Enhancers	HMEC	breast
7	chr15:33706400-33707400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links