Variant report

Variant	rs17817170
Chromosome Location	chr15:33711004-33711005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33705823..33709150-chr15:33710958..33713846,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12906915	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12910838	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12913333	0.96[EUR][1000 genomes]
rs12914919	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16970702	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17236035	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2459471	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2596216	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676018	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676019	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676043	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676045	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676050	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676061	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28566012	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28687371	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34033525	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34299908	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34566980	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35134950	1.00[ASN][1000 genomes]
rs35665563	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35784031	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36061049	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71462865	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71462866	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71462867	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7164680	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7175746	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8035838	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832963	chr15:33514798-33712442	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv568919	chr15:33638335-33736683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33706000-33711400	Weak transcription	Fetal Muscle Leg	muscle
2	chr15:33710800-33711200	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr15:33710800-33711400	Weak transcription	Fetal Brain Female	brain
4	chr15:33711000-33711200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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