Variant report

Variant	rs967092
Chromosome Location	chr15:33849075-33849076
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10152838	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[ASN][1000 genomes]
rs1025578	0.92[AFR][1000 genomes]
rs1025579	0.97[YRI][hapmap];0.92[AFR][1000 genomes]
rs1025580	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1025581	0.88[AFR][1000 genomes]
rs1030767	0.84[AFR][1000 genomes]
rs1030769	0.81[AFR][1000 genomes]
rs1030771	0.82[AFR][1000 genomes]
rs11635764	0.82[AFR][1000 genomes]
rs11639327	0.84[YRI][hapmap];0.82[AFR][1000 genomes]
rs11855374	0.84[AFR][1000 genomes]
rs11857690	0.80[AFR][1000 genomes]
rs12903310	0.81[AFR][1000 genomes]
rs12909241	0.97[YRI][hapmap];0.84[AFR][1000 genomes]
rs1369305	0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs1435099	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs1435101	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs1435102	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs1529845	0.93[YRI][hapmap];0.92[AFR][1000 genomes]
rs1529847	0.91[AFR][1000 genomes]
rs1529848	0.96[YRI][hapmap];0.92[AFR][1000 genomes]
rs1529850	0.92[AFR][1000 genomes]
rs1560965	0.97[YRI][hapmap];0.92[AFR][1000 genomes]
rs1560967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1865496	0.97[YRI][hapmap];0.90[AFR][1000 genomes]
rs2060453	0.82[AFR][1000 genomes]
rs28847986	0.83[AFR][1000 genomes]
rs3794576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3794580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794582	0.81[AFR][1000 genomes]
rs3816092	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4779620	0.87[AFR][1000 genomes]
rs4780123	0.92[AFR][1000 genomes]
rs4780125	0.84[YRI][hapmap];0.81[AFR][1000 genomes]
rs56351250	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6495166	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6495169	0.86[AFR][1000 genomes]
rs7162590	0.81[AFR][1000 genomes]
rs7163719	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7165400	0.82[AFR][1000 genomes]
rs7169363	0.82[AFR][1000 genomes]
rs7174065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7176795	0.84[AFR][1000 genomes]
rs7177351	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7177433	0.84[AFR][1000 genomes]
rs7179429	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7180908	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs744776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs8025449	0.86[AFR][1000 genomes]
rs8040445	0.84[YRI][hapmap]
rs892774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9302270	0.90[AFR][1000 genomes]
rs9302271	0.90[YRI][hapmap];0.85[AFR][1000 genomes]
rs9744361	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs967092	EXOC6	trans	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:33833200-33858400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr15:33834600-33850000	Weak transcription	Colon Smooth Muscle	Colon
4	chr15:33841600-33857200	Weak transcription	Fetal Brain Female	brain
5	chr15:33844800-33860200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:33845400-33855200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:33845600-33851400	Weak transcription	Brain Anterior Caudate	brain
8	chr15:33846400-33851200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:33846400-33857600	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:33846400-33872000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:33848600-33853600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links