Variant report

Variant	rs1529848
Chromosome Location	chr15:33843379-33843380
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33832654..33835580-chr15:33840205..33844028,3	K562	blood:

Extended variants
information (count: 124 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10152838	0.86[YRI][hapmap]
rs1025578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025581	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1025582	0.84[ASN][1000 genomes]
rs1030767	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1030768	0.90[ASN][1000 genomes]
rs1030769	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1030770	0.82[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs1030771	0.95[CHB][hapmap];0.86[JPT][hapmap];0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10519828	0.86[ASN][1000 genomes]
rs1077409	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11072521	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs11072523	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs11072524	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs11072545	0.90[ASN][1000 genomes]
rs11630933	0.91[CHB][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11634054	0.94[ASW][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.82[JPT][hapmap];0.80[LWK][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11634809	0.98[ASN][1000 genomes]
rs11635764	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11637818	0.92[ASN][1000 genomes]
rs11639327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11857690	0.83[ASW][hapmap]
rs12439812	0.89[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs12899789	0.95[CHB][hapmap];0.81[JPT][hapmap];0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12903310	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12909241	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12909992	0.82[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1369305	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1369306	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1369310	0.91[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1435097	0.91[CHB][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1435098	0.91[CHB][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1435099	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1435100	0.91[CHB][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1435101	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1435102	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1435103	0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs1435105	0.81[ASN][1000 genomes]
rs1435106	0.90[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1435120	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1435121	0.83[ASW][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.92[ASN][1000 genomes]
rs1435122	0.91[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1435123	0.94[ASW][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[JPT][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1435124	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1529845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529846	0.86[ASN][1000 genomes]
rs1529847	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529849	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1529850	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1560965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1560966	0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs1560967	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs1579583	0.86[ASN][1000 genomes]
rs1594955	0.95[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs1865495	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1865496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1865499	0.95[CHB][hapmap];0.82[JPT][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2060453	0.94[ASW][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.85[LWK][hapmap];0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2117574	0.81[ASN][1000 genomes]
rs2164250	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2304379	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2339306	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2339307	0.91[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs2339308	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2339309	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs2339310	0.91[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs2572199	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs2572200	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs2572202	0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs2572203	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs3794580	0.92[AFR][1000 genomes]
rs3794581	0.81[ASN][1000 genomes]
rs3794582	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3816092	0.89[ASW][hapmap];0.98[LWK][hapmap];0.88[MKK][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs3829476	0.95[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs3829477	0.95[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs3829478	0.83[ASW][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs4503763	0.94[ASW][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.82[JPT][hapmap];0.80[LWK][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4779620	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4779621	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4780123	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4780124	0.81[ASN][1000 genomes]
rs4780125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4780127	0.88[ASN][1000 genomes]
rs604934	0.96[EUR][1000 genomes]
rs619196	0.89[CEU][hapmap];0.94[TSI][hapmap];0.94[EUR][1000 genomes]
rs6495166	0.88[AFR][1000 genomes]
rs6495169	0.82[AFR][1000 genomes]
rs666342	0.96[EUR][1000 genomes]
rs674155	0.84[CHD][hapmap]
rs680388	0.89[CEU][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes]
rs680792	0.96[EUR][1000 genomes]
rs682639	0.89[CEU][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes]
rs7162590	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7164455	0.94[ASW][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.82[JPT][hapmap];0.80[LWK][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7165400	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7170881	0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7172763	0.95[CHB][hapmap];0.82[JPT][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7174065	0.86[YRI][hapmap];0.87[AFR][1000 genomes]
rs7179398	0.84[EUR][1000 genomes]
rs7179429	0.87[AFR][1000 genomes]
rs721667	0.95[CHB][hapmap];0.82[JPT][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs744776	0.85[LWK][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs8025449	0.82[AFR][1000 genomes]
rs8033477	0.95[CHB][hapmap];0.82[JPT][hapmap];0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs8040445	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs892770	0.86[ASN][1000 genomes]
rs892771	0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs892772	0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs892773	0.86[ASN][1000 genomes]
rs892775	0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs892776	0.81[ASN][1000 genomes]
rs9302270	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9302271	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs957467	0.95[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs967091	0.89[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs967092	0.96[YRI][hapmap];0.92[AFR][1000 genomes]
rs968275	0.86[CEU][hapmap];0.96[EUR][1000 genomes]
rs9744361	0.83[ASW][hapmap];0.80[LWK][hapmap];0.81[AFR][1000 genomes]
rs9806564	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1529848	NDNL2	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33823800-33844000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:33826600-33847800	Weak transcription	Fetal Stomach	stomach
3	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr15:33833200-33858400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr15:33834600-33845000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:33834600-33850000	Weak transcription	Colon Smooth Muscle	Colon
7	chr15:33839200-33847800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr15:33840600-33845600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:33840800-33845000	Strong transcription	Fetal Muscle Leg	muscle
10	chr15:33841600-33857200	Weak transcription	Fetal Brain Female	brain
11	chr15:33843200-33845400	Strong transcription	Stomach Smooth Muscle	stomach
12	chr15:33843200-33845600	Enhancers	Brain Anterior Caudate	brain

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