Variant report

Variant	rs892773
Chromosome Location	chr15:33844410-33844411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1025578	0.86[ASN][1000 genomes]
rs1025579	0.86[ASN][1000 genomes]
rs1025581	0.84[ASN][1000 genomes]
rs1025582	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1030768	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1030770	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10519828	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1077409	0.85[ASN][1000 genomes]
rs11072521	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11072523	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11072524	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11072545	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11634809	0.84[ASN][1000 genomes]
rs11635764	0.84[ASN][1000 genomes]
rs11639327	0.84[ASN][1000 genomes]
rs12439812	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12903310	0.84[ASN][1000 genomes]
rs12909241	0.82[ASN][1000 genomes]
rs12909992	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1369305	0.86[ASN][1000 genomes]
rs1369306	0.83[ASN][1000 genomes]
rs1369310	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1435097	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1435098	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1435099	0.86[ASN][1000 genomes]
rs1435100	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1435101	0.83[ASN][1000 genomes]
rs1435102	0.83[ASN][1000 genomes]
rs1435103	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1435105	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1435106	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1435122	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1529845	0.86[ASN][1000 genomes]
rs1529846	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529847	0.86[ASN][1000 genomes]
rs1529848	0.86[ASN][1000 genomes]
rs1529849	0.85[ASN][1000 genomes]
rs1529850	0.86[ASN][1000 genomes]
rs1560965	0.86[ASN][1000 genomes]
rs1560966	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1579583	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1836548	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1865495	0.84[ASN][1000 genomes]
rs1865496	0.86[ASN][1000 genomes]
rs2117574	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2339307	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2339310	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2437136	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2572199	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2572203	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2596218	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3794581	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3794582	0.84[ASN][1000 genomes]
rs4779620	0.86[ASN][1000 genomes]
rs4780123	0.86[ASN][1000 genomes]
rs4780124	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4780125	0.84[ASN][1000 genomes]
rs589134	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs622365	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6495134	0.89[ASN][1000 genomes]
rs683141	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7162590	0.84[ASN][1000 genomes]
rs7165400	0.82[ASN][1000 genomes]
rs7165619	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7179398	0.89[ASN][1000 genomes]
rs8030946	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8040445	0.83[ASN][1000 genomes]
rs892770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs892771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs892772	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs892775	0.80[ASN][1000 genomes]
rs892776	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9302270	0.86[ASN][1000 genomes]
rs9302271	0.86[ASN][1000 genomes]
rs967091	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33826600-33847800	Weak transcription	Fetal Stomach	stomach
2	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:33833200-33858400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:33834600-33845000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:33834600-33850000	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:33839200-33847800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr15:33840600-33845600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:33840800-33845000	Strong transcription	Fetal Muscle Leg	muscle
9	chr15:33841600-33857200	Weak transcription	Fetal Brain Female	brain
10	chr15:33843200-33845400	Strong transcription	Stomach Smooth Muscle	stomach
11	chr15:33843200-33845600	Enhancers	Brain Anterior Caudate	brain
12	chr15:33844000-33845600	Enhancers	Brain Germinal Matrix	brain
13	chr15:33844200-33844600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:33844200-33844600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:33844200-33845000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr15:33844200-33845400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr15:33844400-33845200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr15:33844400-33845200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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