Variant report

Variant	rs622365
Chromosome Location	chr15:33869183-33869184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1025582	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1030768	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1030770	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10519828	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11072521	0.89[EUR][1000 genomes]
rs11072523	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11072524	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11072545	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11633042	0.90[ASN][1000 genomes]
rs12439812	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12909992	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1369310	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1435097	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1435098	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1435100	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1435103	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1435105	0.96[EUR][1000 genomes]
rs1435106	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1435117	0.95[ASN][1000 genomes]
rs1435118	0.95[ASN][1000 genomes]
rs1435122	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1529846	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1560966	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1579583	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1836548	0.88[EUR][1000 genomes]
rs2117574	0.96[EUR][1000 genomes]
rs2339307	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2339310	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2437136	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2572199	0.87[EUR][1000 genomes]
rs2572203	0.86[EUR][1000 genomes]
rs2596218	0.87[EUR][1000 genomes]
rs2643365	0.94[ASN][1000 genomes]
rs3794581	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4780124	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs589134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603657	0.95[ASN][1000 genomes]
rs604934	1.00[ASN][1000 genomes]
rs605682	0.98[ASN][1000 genomes]
rs606639	0.92[ASN][1000 genomes]
rs619196	0.98[ASN][1000 genomes]
rs620150	0.95[ASN][1000 genomes]
rs620644	0.95[ASN][1000 genomes]
rs666342	1.00[ASN][1000 genomes]
rs674155	0.95[ASN][1000 genomes]
rs680388	1.00[ASN][1000 genomes]
rs680792	1.00[ASN][1000 genomes]
rs680851	0.95[ASN][1000 genomes]
rs682639	1.00[ASN][1000 genomes]
rs683141	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs683484	0.95[ASN][1000 genomes]
rs683553	0.95[ASN][1000 genomes]
rs7165619	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7167970	0.94[ASN][1000 genomes]
rs7169123	0.93[ASN][1000 genomes]
rs8030946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs892770	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs892771	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs892772	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs892773	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs892776	0.88[EUR][1000 genomes]
rs9635321	0.93[ASN][1000 genomes]
rs968275	1.00[ASN][1000 genomes]
rs9806564	1.00[ASN][1000 genomes]
rs9806613	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:33846400-33872000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:33858000-33921200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:33858600-33895200	Weak transcription	Fetal Muscle Leg	muscle
5	chr15:33859200-33923200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:33866600-33871200	Weak transcription	Ovary	ovary

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