Variant report

Variant	rs606639
Chromosome Location	chr15:33870355-33870356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33870139..33872552-chr17:56728731..56731471,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11633042	0.83[ASN][1000 genomes]
rs11634054	0.82[JPT][hapmap]
rs12899789	0.86[JPT][hapmap]
rs1369310	0.83[JPT][hapmap]
rs1435117	0.87[ASN][1000 genomes]
rs1435118	0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs1435122	0.82[JPT][hapmap]
rs1435123	0.82[JPT][hapmap]
rs1594955	0.83[JPT][hapmap]
rs1865499	0.83[JPT][hapmap]
rs2339307	0.82[JPT][hapmap]
rs2339309	0.83[JPT][hapmap]
rs2339310	0.82[JPT][hapmap]
rs2437136	0.93[ASN][1000 genomes]
rs2643365	0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs3829476	0.83[JPT][hapmap]
rs3829477	0.83[JPT][hapmap]
rs3829478	0.82[JPT][hapmap]
rs4503763	0.82[JPT][hapmap]
rs589134	0.92[ASN][1000 genomes]
rs603657	0.88[ASN][1000 genomes]
rs604934	0.92[ASN][1000 genomes]
rs605682	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs619196	0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs620150	0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs620644	0.88[ASN][1000 genomes]
rs622365	0.92[ASN][1000 genomes]
rs666342	0.92[ASN][1000 genomes]
rs674155	0.90[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs680388	0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs680792	0.92[ASN][1000 genomes]
rs680851	0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs682639	0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs683141	0.92[ASN][1000 genomes]
rs683484	0.90[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs683553	0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs7164455	0.82[JPT][hapmap]
rs7167970	0.86[ASN][1000 genomes]
rs7169123	0.85[ASN][1000 genomes]
rs7170881	0.87[JPT][hapmap]
rs7172763	0.83[JPT][hapmap]
rs721667	0.83[JPT][hapmap]
rs8030946	0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs8033477	0.83[JPT][hapmap]
rs9635321	0.85[ASN][1000 genomes]
rs968275	0.91[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs9806564	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:33846400-33872000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:33858000-33921200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:33858600-33895200	Weak transcription	Fetal Muscle Leg	muscle
5	chr15:33859200-33923200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:33866600-33871200	Weak transcription	Ovary	ovary

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