Variant report

Variant	rs2643365
Chromosome Location	chr15:33871487-33871488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33870139..33872552-chr17:56728731..56731471,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1030770	0.86[JPT][hapmap]
rs1030771	0.87[JPT][hapmap]
rs11630933	0.87[JPT][hapmap]
rs11633042	0.93[ASN][1000 genomes]
rs11634054	0.91[JPT][hapmap]
rs12439812	0.86[JPT][hapmap]
rs12899789	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1369310	0.91[JPT][hapmap]
rs1435117	0.99[ASN][1000 genomes]
rs1435118	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1435121	0.86[JPT][hapmap]
rs1435122	0.91[JPT][hapmap]
rs1435123	0.91[JPT][hapmap]
rs1594955	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1865499	0.91[JPT][hapmap]
rs2060453	0.86[JPT][hapmap]
rs2339307	0.91[JPT][hapmap]
rs2339309	0.91[JPT][hapmap]
rs2339310	0.91[JPT][hapmap]
rs2437136	0.95[ASN][1000 genomes]
rs3829476	0.91[JPT][hapmap]
rs3829477	0.91[JPT][hapmap]
rs3829478	0.91[JPT][hapmap]
rs4503763	0.91[JPT][hapmap]
rs4779621	0.82[ASN][1000 genomes]
rs4780127	0.84[ASN][1000 genomes]
rs589134	0.94[ASN][1000 genomes]
rs603657	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs604934	0.94[ASN][1000 genomes]
rs605682	0.95[ASN][1000 genomes]
rs606639	0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs619196	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs620150	0.96[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs620644	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs622365	0.94[ASN][1000 genomes]
rs666342	0.94[ASN][1000 genomes]
rs674155	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs680388	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs680792	0.94[ASN][1000 genomes]
rs680851	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs682639	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs683141	0.94[ASN][1000 genomes]
rs683484	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs683553	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7164455	0.91[JPT][hapmap]
rs7167970	0.97[ASN][1000 genomes]
rs7169123	0.97[ASN][1000 genomes]
rs7170881	0.91[JPT][hapmap]
rs7172763	0.91[JPT][hapmap]
rs721667	0.91[JPT][hapmap]
rs8030946	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8033477	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs9635321	0.97[ASN][1000 genomes]
rs968275	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9806564	0.94[ASN][1000 genomes]
rs9806613	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:33846400-33872000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:33858000-33921200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:33858600-33895200	Weak transcription	Fetal Muscle Leg	muscle
5	chr15:33859200-33923200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:33871400-33872200	Weak transcription	Ovary	ovary

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