Variant report

Variant	rs674155
Chromosome Location	chr15:33872177-33872178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33870139..33872552-chr17:56728731..56731471,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1030767	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1030769	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1030770	0.85[JPT][hapmap]
rs1030771	0.94[CEU][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs1077409	0.84[CHD][hapmap]
rs11630933	0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11633042	0.94[ASN][1000 genomes]
rs11634054	0.86[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11637818	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12439812	0.86[JPT][hapmap]
rs12899789	0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1369305	0.83[CHD][hapmap]
rs1369310	0.91[JPT][hapmap]
rs1435099	0.84[CHD][hapmap]
rs1435117	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1435118	1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1435120	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1435121	0.86[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1435122	0.91[JPT][hapmap]
rs1435123	0.86[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1435124	0.81[ASN][1000 genomes]
rs1529848	0.84[CHD][hapmap]
rs1529849	0.84[CHD][hapmap]
rs1594955	0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1865495	0.84[CHD][hapmap]
rs1865499	0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2060453	0.88[CEU][hapmap];0.86[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs2304379	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2339306	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2339307	0.91[JPT][hapmap]
rs2339309	0.91[JPT][hapmap]
rs2339310	0.91[JPT][hapmap]
rs2437136	0.95[ASN][1000 genomes]
rs2643365	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3829476	0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3829477	0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3829478	0.86[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.93[MEX][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4503763	0.86[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4779621	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4780127	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs589134	0.95[ASN][1000 genomes]
rs603657	0.99[ASN][1000 genomes]
rs604934	0.95[ASN][1000 genomes]
rs605682	0.94[ASN][1000 genomes]
rs606639	0.90[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs619196	0.95[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs620150	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs620644	0.99[ASN][1000 genomes]
rs622365	0.95[ASN][1000 genomes]
rs666342	0.95[ASN][1000 genomes]
rs680388	0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs680792	0.95[ASN][1000 genomes]
rs680851	1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs682639	0.95[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs683141	0.95[ASN][1000 genomes]
rs683484	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs683553	1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7164455	0.86[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7167970	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7169123	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7170881	0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7172763	0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs721667	0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8030946	0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs8033477	0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9635321	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs968275	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9806564	0.95[ASN][1000 genomes]
rs9806613	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:33858000-33921200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr15:33858600-33895200	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:33859200-33923200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr15:33871400-33872200	Weak transcription	Ovary	ovary
6	chr15:33872000-33872200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:33872000-33872400	Enhancers	Placenta Amnion	Placenta Amnion
8	chr15:33872000-33873200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:33872000-33874600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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