Variant report

Variant	rs1030769
Chromosome Location	chr15:33853686-33853687
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1025578	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1025579	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1025581	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1030767	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1030768	0.95[ASN][1000 genomes]
rs1030770	0.94[ASN][1000 genomes]
rs1030771	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1077409	0.91[ASN][1000 genomes]
rs11072545	0.95[ASN][1000 genomes]
rs11630933	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11634054	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11634809	0.92[ASN][1000 genomes]
rs11635764	0.93[ASN][1000 genomes]
rs11637818	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11639327	0.93[ASN][1000 genomes]
rs11855374	0.89[AFR][1000 genomes]
rs11857690	0.86[AFR][1000 genomes]
rs11857828	0.83[AFR][1000 genomes]
rs12439812	0.94[ASN][1000 genomes]
rs12899789	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12903310	0.93[ASN][1000 genomes]
rs12909241	0.88[ASN][1000 genomes]
rs1369305	0.92[ASN][1000 genomes]
rs1369306	0.89[ASN][1000 genomes]
rs1369310	0.95[ASN][1000 genomes]
rs1435099	0.92[ASN][1000 genomes]
rs1435101	0.89[ASN][1000 genomes]
rs1435102	0.89[ASN][1000 genomes]
rs1435120	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1435121	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1435122	0.95[ASN][1000 genomes]
rs1435123	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1435124	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529845	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1529847	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1529848	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1529849	0.91[ASN][1000 genomes]
rs1529850	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1560965	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1579583	0.91[ASN][1000 genomes]
rs1579584	0.90[AFR][1000 genomes]
rs1594955	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16972617	0.85[AFR][1000 genomes]
rs1865495	0.92[ASN][1000 genomes]
rs1865496	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1865499	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2060453	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2164250	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2304379	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2339306	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2339307	0.95[ASN][1000 genomes]
rs2339308	0.91[ASN][1000 genomes]
rs2339310	0.95[ASN][1000 genomes]
rs2572200	0.86[ASN][1000 genomes]
rs2572202	0.85[ASN][1000 genomes]
rs28847986	0.89[AFR][1000 genomes]
rs3794580	0.81[AFR][1000 genomes]
rs3794582	0.93[ASN][1000 genomes]
rs3829476	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3829477	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3829478	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4503763	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4779620	0.92[ASN][1000 genomes]
rs4779621	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4780123	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4780125	0.94[ASN][1000 genomes]
rs4780127	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6495169	0.92[AFR][1000 genomes]
rs6495170	0.86[AFR][1000 genomes]
rs674155	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs683484	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7162590	0.93[ASN][1000 genomes]
rs7164455	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7165400	0.88[ASN][1000 genomes]
rs7167970	0.81[ASN][1000 genomes]
rs7169123	0.82[ASN][1000 genomes]
rs7169363	0.88[AFR][1000 genomes]
rs7170881	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7172763	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7176795	0.90[AFR][1000 genomes]
rs7177433	0.90[AFR][1000 genomes]
rs721667	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8025449	0.92[AFR][1000 genomes]
rs8033477	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8039434	0.83[AFR][1000 genomes]
rs8040445	0.92[ASN][1000 genomes]
rs892775	0.87[ASN][1000 genomes]
rs9302270	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9302271	0.92[ASN][1000 genomes]
rs957467	0.85[ASN][1000 genomes]
rs9635321	0.82[ASN][1000 genomes]
rs967092	0.81[AFR][1000 genomes]
rs9744361	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:33833200-33858400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr15:33841600-33857200	Weak transcription	Fetal Brain Female	brain
4	chr15:33844800-33860200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:33845400-33855200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr15:33846400-33857600	Weak transcription	Fetal Muscle Leg	muscle
7	chr15:33846400-33872000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:33851000-33854400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:33851000-33854600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr15:33851200-33854000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr15:33851200-33854200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr15:33851200-33854400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr15:33851800-33856800	Weak transcription	Aorta	Aorta
14	chr15:33851800-33857800	Weak transcription	Brain Anterior Caudate	brain
15	chr15:33853200-33854000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr15:33853200-33854200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr15:33853400-33853800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr15:33853400-33854400	Enhancers	H9 Cell Line	embryonic stem cell
19	chr15:33853400-33854600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr15:33853600-33853800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr15:33853600-33853800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr15:33853600-33856800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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