Variant report
Variant | rs11634809 |
---|---|
Chromosome Location | chr15:33850294-33850295 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1025578 | 0.98[ASN][1000 genomes] |
rs1025579 | 0.98[ASN][1000 genomes] |
rs1025581 | 0.96[ASN][1000 genomes] |
rs1025582 | 0.82[ASN][1000 genomes] |
rs1030767 | 0.92[ASN][1000 genomes] |
rs1030768 | 0.90[ASN][1000 genomes] |
rs1030769 | 0.92[ASN][1000 genomes] |
rs1030770 | 0.92[ASN][1000 genomes] |
rs1030771 | 0.94[ASN][1000 genomes] |
rs10519828 | 0.84[ASN][1000 genomes] |
rs1077409 | 0.99[ASN][1000 genomes] |
rs11072545 | 0.90[ASN][1000 genomes] |
rs11630933 | 0.92[ASN][1000 genomes] |
rs11634054 | 0.92[ASN][1000 genomes] |
rs11635764 | 0.85[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs11637818 | 0.92[ASN][1000 genomes] |
rs11639327 | 0.85[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs12439812 | 0.92[ASN][1000 genomes] |
rs12899789 | 0.88[ASN][1000 genomes] |
rs12903310 | 0.83[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs12909241 | 0.94[ASN][1000 genomes] |
rs1369305 | 0.98[ASN][1000 genomes] |
rs1369306 | 0.95[ASN][1000 genomes] |
rs1369310 | 0.90[ASN][1000 genomes] |
rs1435097 | 0.84[ASN][1000 genomes] |
rs1435098 | 0.84[ASN][1000 genomes] |
rs1435099 | 0.84[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs1435100 | 0.83[ASN][1000 genomes] |
rs1435101 | 0.95[ASN][1000 genomes] |
rs1435102 | 0.95[ASN][1000 genomes] |
rs1435103 | 0.82[ASN][1000 genomes] |
rs1435120 | 0.92[ASN][1000 genomes] |
rs1435121 | 0.92[ASN][1000 genomes] |
rs1435122 | 0.90[ASN][1000 genomes] |
rs1435123 | 0.92[ASN][1000 genomes] |
rs1435124 | 0.92[ASN][1000 genomes] |
rs1529845 | 0.98[ASN][1000 genomes] |
rs1529846 | 0.84[ASN][1000 genomes] |
rs1529847 | 0.98[ASN][1000 genomes] |
rs1529848 | 0.98[ASN][1000 genomes] |
rs1529849 | 0.99[ASN][1000 genomes] |
rs1529850 | 0.98[ASN][1000 genomes] |
rs1560965 | 0.98[ASN][1000 genomes] |
rs1560966 | 0.81[ASN][1000 genomes] |
rs1579583 | 0.87[ASN][1000 genomes] |
rs1594955 | 0.87[ASN][1000 genomes] |
rs1865495 | 0.99[ASN][1000 genomes] |
rs1865496 | 0.98[ASN][1000 genomes] |
rs1865499 | 0.92[ASN][1000 genomes] |
rs2060453 | 0.94[ASN][1000 genomes] |
rs2164250 | 0.89[ASN][1000 genomes] |
rs2304379 | 0.92[ASN][1000 genomes] |
rs2339306 | 0.92[ASN][1000 genomes] |
rs2339307 | 0.90[ASN][1000 genomes] |
rs2339308 | 0.86[ASN][1000 genomes] |
rs2339310 | 0.90[ASN][1000 genomes] |
rs2572200 | 0.94[ASN][1000 genomes] |
rs2572202 | 0.90[ASN][1000 genomes] |
rs3794581 | 0.81[ASN][1000 genomes] |
rs3794582 | 0.83[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs3829476 | 0.92[ASN][1000 genomes] |
rs3829477 | 0.92[ASN][1000 genomes] |
rs3829478 | 0.92[ASN][1000 genomes] |
rs4503763 | 0.92[ASN][1000 genomes] |
rs4779620 | 0.98[ASN][1000 genomes] |
rs4779621 | 0.87[ASN][1000 genomes] |
rs4780123 | 0.98[ASN][1000 genomes] |
rs4780125 | 0.84[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs4780127 | 0.88[ASN][1000 genomes] |
rs7162590 | 0.84[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs7164455 | 0.92[ASN][1000 genomes] |
rs7165400 | 0.94[ASN][1000 genomes] |
rs7170881 | 0.92[ASN][1000 genomes] |
rs7172763 | 0.92[ASN][1000 genomes] |
rs721667 | 0.92[ASN][1000 genomes] |
rs8033477 | 0.90[ASN][1000 genomes] |
rs8040445 | 0.82[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs892770 | 0.84[ASN][1000 genomes] |
rs892771 | 0.84[ASN][1000 genomes] |
rs892772 | 0.84[ASN][1000 genomes] |
rs892773 | 0.84[ASN][1000 genomes] |
rs892775 | 0.94[ASN][1000 genomes] |
rs892776 | 0.81[ASN][1000 genomes] |
rs9302270 | 0.98[ASN][1000 genomes] |
rs9302271 | 0.98[ASN][1000 genomes] |
rs957467 | 0.92[ASN][1000 genomes] |
rs967091 | 0.83[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1043046 | chr15:33714908-34321330 | Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
2 | esv34041 | chr15:33720726-33871487 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
3 | esv34037 | chr15:33732616-34049083 | Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:33827400-33877200 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
2 | chr15:33833200-33858400 | Weak transcription | Fetal Muscle Trunk | muscle |
3 | chr15:33841600-33857200 | Weak transcription | Fetal Brain Female | brain |
4 | chr15:33844800-33860200 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
5 | chr15:33845400-33855200 | Weak transcription | Stomach Smooth Muscle | stomach |
6 | chr15:33845600-33851400 | Weak transcription | Brain Anterior Caudate | brain |
7 | chr15:33846400-33851200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
8 | chr15:33846400-33857600 | Weak transcription | Fetal Muscle Leg | muscle |
9 | chr15:33846400-33872000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
10 | chr15:33848600-33853600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |