Variant report

Variant	rs3794581
Chromosome Location	chr15:33849818-33849819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1025578	0.81[ASN][1000 genomes]
rs1025579	0.81[ASN][1000 genomes]
rs1025582	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1030768	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1030770	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10519828	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1077409	0.81[ASN][1000 genomes]
rs11072521	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11072523	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11072524	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11072545	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11634809	0.81[ASN][1000 genomes]
rs11635764	0.81[ASN][1000 genomes]
rs11639327	0.81[ASN][1000 genomes]
rs12439812	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12903310	0.81[ASN][1000 genomes]
rs12909992	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1369305	0.81[ASN][1000 genomes]
rs1369310	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1435097	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1435098	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1435099	0.81[ASN][1000 genomes]
rs1435100	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1435103	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1435105	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1435106	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1435122	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1529845	0.81[ASN][1000 genomes]
rs1529846	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1529847	0.81[ASN][1000 genomes]
rs1529848	0.81[ASN][1000 genomes]
rs1529849	0.81[ASN][1000 genomes]
rs1529850	0.81[ASN][1000 genomes]
rs1560965	0.81[ASN][1000 genomes]
rs1560966	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1579583	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1836548	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1865495	0.81[ASN][1000 genomes]
rs1865496	0.81[ASN][1000 genomes]
rs2117574	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2339307	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2339310	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2437136	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2572199	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2572203	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2596218	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3794582	0.81[ASN][1000 genomes]
rs4779620	0.81[ASN][1000 genomes]
rs4780123	0.81[ASN][1000 genomes]
rs4780124	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4780125	0.81[ASN][1000 genomes]
rs589134	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs622365	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6495134	0.84[ASN][1000 genomes]
rs683141	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7162590	0.81[ASN][1000 genomes]
rs7165619	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7179398	0.91[ASN][1000 genomes]
rs8030946	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8040445	0.80[ASN][1000 genomes]
rs892770	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs892771	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs892772	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs892773	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs892776	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9302270	0.81[ASN][1000 genomes]
rs9302271	0.81[ASN][1000 genomes]
rs967091	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:33833200-33858400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr15:33834600-33850000	Weak transcription	Colon Smooth Muscle	Colon
4	chr15:33841600-33857200	Weak transcription	Fetal Brain Female	brain
5	chr15:33844800-33860200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:33845400-33855200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:33845600-33851400	Weak transcription	Brain Anterior Caudate	brain
8	chr15:33846400-33851200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:33846400-33857600	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:33846400-33872000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:33848600-33853600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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