Variant report

Variant	rs7165619
Chromosome Location	chr15:33846657-33846658
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1025582	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1030768	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1030770	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10519828	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11072521	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11072523	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11072524	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11072545	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12439812	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12909992	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1369310	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1435097	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1435098	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1435100	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1435103	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1435105	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1435106	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1435122	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1529846	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1560966	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1579583	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1836548	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2117574	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2339307	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2339310	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2437136	0.86[EUR][1000 genomes]
rs2572199	0.85[ASN][1000 genomes]
rs2572203	0.81[ASN][1000 genomes]
rs2596218	0.84[ASN][1000 genomes]
rs3794581	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4780124	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs589134	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs622365	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6495134	0.81[ASN][1000 genomes]
rs683141	0.86[EUR][1000 genomes]
rs7179398	0.84[ASN][1000 genomes]
rs8030946	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs892770	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs892771	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs892772	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs892773	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs892776	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs967091	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33826600-33847800	Weak transcription	Fetal Stomach	stomach
2	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:33833200-33858400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:33834600-33850000	Weak transcription	Colon Smooth Muscle	Colon
5	chr15:33839200-33847800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:33841600-33857200	Weak transcription	Fetal Brain Female	brain
7	chr15:33844800-33860200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:33845400-33855200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr15:33845600-33846800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:33845600-33851400	Weak transcription	Brain Anterior Caudate	brain
11	chr15:33846400-33851200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:33846400-33857600	Weak transcription	Fetal Muscle Leg	muscle
13	chr15:33846400-33872000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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