Variant report

Variant	rs1435098
Chromosome Location	chr15:33847607-33847608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs1025578	0.85[ASN][1000 genomes]
rs1025579	0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1025581	0.91[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs1025582	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1030768	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1030770	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1030771	0.87[CHB][hapmap]
rs10519828	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1077409	0.87[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs11072521	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11072523	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11072524	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11072545	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11630933	0.82[CHB][hapmap]
rs11634054	0.87[CHB][hapmap]
rs11634809	0.84[ASN][1000 genomes]
rs11635764	0.85[ASN][1000 genomes]
rs11639327	0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs12439812	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12899789	0.86[CHB][hapmap]
rs12903310	0.85[ASN][1000 genomes]
rs12909241	0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs12909992	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1369305	0.91[CHB][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1369306	0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1369310	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1435097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1435099	0.91[CHB][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1435100	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1435101	0.91[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs1435102	0.91[CHB][hapmap];0.90[GIH][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs1435103	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1435105	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1435106	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1435121	0.87[CHB][hapmap]
rs1435122	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1435123	0.87[CHB][hapmap]
rs1529845	0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1529846	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1529847	0.85[ASN][1000 genomes]
rs1529848	0.91[CHB][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1529849	0.87[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1529850	0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1560965	0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1560966	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1579583	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1594955	0.87[CHB][hapmap]
rs16971851	0.82[CHB][hapmap]
rs1836548	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1865495	0.87[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1865496	0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1865499	0.87[CHB][hapmap]
rs2060453	0.87[CHB][hapmap]
rs2117574	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2339307	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[MEX][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2339309	0.86[CHB][hapmap]
rs2339310	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2437136	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2572199	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2572200	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs2572202	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs2572203	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2596218	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3794581	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3794582	0.85[ASN][1000 genomes]
rs3829476	0.87[CHB][hapmap]
rs3829477	0.87[CHB][hapmap]
rs3829478	0.87[CHB][hapmap]
rs4503763	0.87[CHB][hapmap]
rs4779620	0.85[ASN][1000 genomes]
rs4780123	0.85[ASN][1000 genomes]
rs4780124	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4780125	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs589134	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs622365	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6495134	0.87[ASN][1000 genomes]
rs682639	0.86[MEX][hapmap]
rs683141	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7162590	0.85[ASN][1000 genomes]
rs7164455	0.87[CHB][hapmap]
rs7165400	0.81[ASN][1000 genomes]
rs7165619	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7170881	0.86[CHB][hapmap]
rs7172763	0.91[CHB][hapmap]
rs7179398	0.90[ASN][1000 genomes]
rs721667	0.87[CHB][hapmap]
rs8030946	1.00[CEU][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8033477	0.87[CHB][hapmap]
rs8040445	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs892770	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs892771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs892772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs892773	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs892775	0.87[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs892776	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9302270	0.85[ASN][1000 genomes]
rs9302271	0.90[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs957467	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs967091	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33826600-33847800	Weak transcription	Fetal Stomach	stomach
2	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:33833200-33858400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:33834600-33850000	Weak transcription	Colon Smooth Muscle	Colon
5	chr15:33839200-33847800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:33841600-33857200	Weak transcription	Fetal Brain Female	brain
7	chr15:33844800-33860200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:33845400-33855200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr15:33845600-33851400	Weak transcription	Brain Anterior Caudate	brain
10	chr15:33846400-33851200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:33846400-33857600	Weak transcription	Fetal Muscle Leg	muscle
12	chr15:33846400-33872000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:33847200-33848200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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