Variant report

Variant	rs16971851
Chromosome Location	chr15:33812509-33812510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11072524	0.81[CHB][hapmap]
rs1435097	0.82[CHB][hapmap]
rs1435098	0.82[CHB][hapmap]
rs1435100	0.82[CHB][hapmap]
rs1435103	0.82[CHB][hapmap]
rs1435106	0.80[CHB][hapmap]
rs1560966	0.82[CHB][hapmap]
rs2572199	0.82[CHB][hapmap]
rs2572203	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs892771	0.82[CHB][hapmap]
rs892772	0.82[CHB][hapmap]
rs967091	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs16971851	FMN1	cis	parietal	SCAN
rs16971851	FMN1	cis	cerebellum	SCAN
rs16971851	GREM1	cis	parietal	SCAN
rs16971851	PGBD4	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33794800-33836200	Weak transcription	Aorta	Aorta
2	chr15:33808200-33812800	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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