Variant report

Variant	rs1560967
Chromosome Location	chr15:33839451-33839452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10152838	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1025578	0.88[AFR][1000 genomes]
rs1025579	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs1025580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1025581	0.88[AFR][1000 genomes]
rs10438371	1.00[CEU][hapmap]
rs10438372	1.00[CEU][hapmap]
rs11639327	0.81[YRI][hapmap]
rs11857690	0.84[AFR][1000 genomes]
rs12324553	1.00[CEU][hapmap]
rs12909241	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs1369305	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1369306	0.81[YRI][hapmap]
rs1435099	0.86[YRI][hapmap]
rs1435101	0.97[YRI][hapmap];0.95[AFR][1000 genomes]
rs1435102	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs1529845	0.97[YRI][hapmap];0.88[AFR][1000 genomes]
rs1529847	0.88[AFR][1000 genomes]
rs1529848	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs1529850	0.88[AFR][1000 genomes]
rs1560965	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs16957454	1.00[CEU][hapmap]
rs16970272	1.00[CEU][hapmap]
rs16971191	1.00[CEU][hapmap]
rs16971194	1.00[CEU][hapmap]
rs16972617	0.83[AFR][1000 genomes]
rs1865496	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs2572161	1.00[CEU][hapmap]
rs3794576	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3794580	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3816092	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4779620	0.83[AFR][1000 genomes]
rs4780123	0.88[AFR][1000 genomes]
rs4780125	0.81[YRI][hapmap]
rs56351250	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6495092	1.00[CEU][hapmap]
rs6495166	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7161916	1.00[CEU][hapmap]
rs7163719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7174065	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7177351	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7179429	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7180908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs744776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8027137	1.00[CEU][hapmap]
rs8039172	1.00[CEU][hapmap]
rs8040445	0.81[YRI][hapmap]
rs892774	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9302270	0.89[AFR][1000 genomes]
rs9302271	0.93[YRI][hapmap];0.94[AFR][1000 genomes]
rs967092	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33818400-33840800	Weak transcription	Fetal Muscle Leg	muscle
2	chr15:33823800-33844000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr15:33826600-33847800	Weak transcription	Fetal Stomach	stomach
4	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr15:33832600-33839800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:33833200-33858400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr15:33834600-33845000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:33834600-33850000	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:33836400-33843200	Weak transcription	Brain Anterior Caudate	brain
10	chr15:33837600-33840600	Weak transcription	Aorta	Aorta
11	chr15:33838200-33840200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:33838600-33840600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:33838600-33843200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr15:33839200-33847800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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