Variant report

Variant	rs16958242
Chromosome Location	chr15:34180473-34180474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34173988..34176923-chr15:34179211..34180812,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10519889	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11629862	0.80[EUR][1000 genomes]
rs11853646	0.88[EUR][1000 genomes]
rs11855356	0.80[EUR][1000 genomes]
rs16958170	0.85[AFR][1000 genomes]
rs16958202	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16958222	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958228	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958235	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958247	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958281	0.80[EUR][1000 genomes]
rs41279232	0.87[EUR][1000 genomes]
rs55688824	0.87[EUR][1000 genomes]
rs55726623	0.87[EUR][1000 genomes]
rs55786211	0.87[EUR][1000 genomes]
rs55803898	0.87[EUR][1000 genomes]
rs55846435	0.87[EUR][1000 genomes]
rs55980511	0.87[EUR][1000 genomes]
rs56090340	0.87[EUR][1000 genomes]
rs56220027	0.85[EUR][1000 genomes]
rs56258848	0.87[EUR][1000 genomes]
rs56385459	0.87[EUR][1000 genomes]
rs57308544	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60933918	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61027076	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61172583	0.86[AFR][1000 genomes]
rs61247330	0.86[AFR][1000 genomes]
rs6495303	0.86[AFR][1000 genomes]
rs6495305	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7165072	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7165981	0.86[AFR][1000 genomes]
rs7168937	0.88[AFR][1000 genomes]
rs7170693	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7170929	0.82[AFR][1000 genomes]
rs7176081	0.95[EUR][1000 genomes]
rs7177269	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7177583	0.86[AFR][1000 genomes]
rs7177889	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7178927	0.83[AFR][1000 genomes]
rs7181961	0.85[AFR][1000 genomes]
rs73372076	0.87[EUR][1000 genomes]
rs73375714	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73375717	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8024867	0.86[AFR][1000 genomes]
rs8026540	0.82[AFR][1000 genomes]
rs8026717	0.85[AFR][1000 genomes]
rs8034673	0.86[AFR][1000 genomes]
rs8038636	0.85[AFR][1000 genomes]
rs8041144	0.86[AFR][1000 genomes]
rs8041406	0.82[AFR][1000 genomes]
rs8041930	0.85[AFR][1000 genomes]
rs9302282	0.80[EUR][1000 genomes]
rs9302283	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv903984	chr15:34174066-34238804	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv568922	chr15:34175972-34194586	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34160000-34199400	Weak transcription	Left Ventricle	heart
2	chr15:34164400-34186400	Weak transcription	Right Atrium	heart
3	chr15:34180400-34180800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr15:34180400-34180800	Enhancers	Skeletal Muscle Female	skeletal muscle

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