Variant report

Variant	rs11855356
Chromosome Location	chr15:34156652-34156653
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10438378	1.00[CEU][hapmap]
rs10519889	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs11629862	1.00[EUR][1000 genomes]
rs11853646	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12899100	0.82[CEU][hapmap]
rs16958202	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs16958222	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs16958228	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs16958235	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs16958242	0.80[EUR][1000 genomes]
rs16958247	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs16958281	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs16958299	1.00[CEU][hapmap]
rs41279232	0.92[EUR][1000 genomes]
rs55688824	0.92[EUR][1000 genomes]
rs55726623	0.92[EUR][1000 genomes]
rs55786211	0.92[EUR][1000 genomes]
rs55803898	0.92[EUR][1000 genomes]
rs55846435	0.92[EUR][1000 genomes]
rs55980511	0.92[EUR][1000 genomes]
rs56090340	0.92[EUR][1000 genomes]
rs56258848	0.92[EUR][1000 genomes]
rs56385459	0.92[EUR][1000 genomes]
rs57308544	0.85[EUR][1000 genomes]
rs60933918	0.85[EUR][1000 genomes]
rs61027076	0.80[EUR][1000 genomes]
rs6495271	1.00[CEU][hapmap]
rs6495305	0.83[EUR][1000 genomes]
rs7165072	0.85[EUR][1000 genomes]
rs7170693	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs7176081	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7177269	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs7177889	0.85[EUR][1000 genomes]
rs73372076	0.92[EUR][1000 genomes]
rs73375714	0.80[EUR][1000 genomes]
rs73375717	0.80[EUR][1000 genomes]
rs9302282	1.00[EUR][1000 genomes]
rs9302283	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34121400-34158400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr15:34130800-34158600	Weak transcription	Brain Germinal Matrix	brain
3	chr15:34137400-34164200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:34139800-34164200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:34142400-34168600	Weak transcription	Esophagus	oesophagus
6	chr15:34143000-34165000	Weak transcription	Psoas Muscle	Psoas
7	chr15:34143400-34160400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:34143600-34164200	Weak transcription	Brain Angular Gyrus	brain
9	chr15:34145000-34158200	Weak transcription	Gastric	stomach
10	chr15:34145000-34161200	Weak transcription	Small Intestine	intestine
11	chr15:34145600-34158200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr15:34145600-34158600	Weak transcription	HSMM	muscle
13	chr15:34145800-34158400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:34146400-34158200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:34146800-34164000	Weak transcription	Right Ventricle	heart
16	chr15:34147200-34162400	Weak transcription	Pancreas	Pancrea
17	chr15:34147400-34164200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr15:34148600-34158400	Weak transcription	Ovary	ovary
19	chr15:34148600-34159400	Weak transcription	Lung	lung
20	chr15:34149400-34165800	Weak transcription	Fetal Intestine Small	intestine
21	chr15:34149600-34157000	Weak transcription	Fetal Intestine Large	intestine
22	chr15:34149600-34158400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr15:34150200-34164000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr15:34150200-34164000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr15:34150800-34167400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr15:34151200-34157200	Strong transcription	Aorta	Aorta
27	chr15:34151400-34158200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:34151400-34158200	Weak transcription	Placenta	Placenta
29	chr15:34151600-34161000	Weak transcription	Thymus	Thymus
30	chr15:34152000-34164200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:34152400-34157600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr15:34152400-34157800	Weak transcription	Brain Hippocampus Middle	brain
33	chr15:34152400-34158000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr15:34152400-34161800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr15:34152400-34162400	Weak transcription	Spleen	Spleen
36	chr15:34152400-34167600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr15:34152600-34158000	Weak transcription	Brain Anterior Caudate	brain
38	chr15:34152600-34160000	Weak transcription	Fetal Brain Female	brain
39	chr15:34152600-34164200	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr15:34152600-34164200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr15:34153200-34158200	Weak transcription	Left Ventricle	heart
42	chr15:34153200-34164200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr15:34153400-34158000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr15:34153400-34158000	Weak transcription	A549	lung
45	chr15:34153400-34166400	Weak transcription	HMEC	breast
46	chr15:34153600-34156800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr15:34153600-34158200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr15:34153600-34158400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr15:34153600-34158400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr15:34153600-34158400	Weak transcription	Hela-S3	cervix

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