Variant report

Variant	rs16958281
Chromosome Location	chr15:34191108-34191109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10438378	1.00[CEU][hapmap]
rs10519889	0.85[CEU][hapmap];0.85[TSI][hapmap]
rs11629862	0.90[EUR][1000 genomes]
rs11853646	1.00[CEU][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs11855356	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12899100	0.82[CEU][hapmap];0.85[TSI][hapmap]
rs16958202	0.85[CEU][hapmap]
rs16958222	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs16958228	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs16958235	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs16958242	0.80[EUR][1000 genomes]
rs16958247	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs16958299	1.00[CEU][hapmap]
rs41279232	0.82[EUR][1000 genomes]
rs55688824	0.82[EUR][1000 genomes]
rs55726623	0.82[EUR][1000 genomes]
rs55786211	0.82[EUR][1000 genomes]
rs55803898	0.82[EUR][1000 genomes]
rs55846435	0.82[EUR][1000 genomes]
rs55980511	0.82[EUR][1000 genomes]
rs56090340	0.82[EUR][1000 genomes]
rs56258848	0.82[EUR][1000 genomes]
rs56385459	0.82[EUR][1000 genomes]
rs61027076	0.80[EUR][1000 genomes]
rs621908	0.85[EUR][1000 genomes]
rs6495271	1.00[CEU][hapmap]
rs7170693	0.82[CEU][hapmap]
rs7176081	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs7177269	0.85[CEU][hapmap];0.85[TSI][hapmap]
rs73372076	0.82[EUR][1000 genomes]
rs73375714	0.80[EUR][1000 genomes]
rs73375717	0.80[EUR][1000 genomes]
rs9302282	1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9302283	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv903984	chr15:34174066-34238804	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv568922	chr15:34175972-34194586	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34160000-34199400	Weak transcription	Left Ventricle	heart
2	chr15:34189800-34191400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:34189800-34193200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr15:34190400-34191200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:34190400-34191200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr15:34190400-34191200	Enhancers	Osteobl	bone
7	chr15:34190600-34191200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr15:34190800-34191400	Enhancers	GM12878-XiMat	blood
9	chr15:34191000-34202800	Weak transcription	NHLF	lung

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