Variant report

Variant	rs6495403
Chromosome Location	chr15:34255304-34255305
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10162617	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11854992	1.00[CEU][hapmap]
rs13379557	0.84[AFR][1000 genomes]
rs13379743	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1529542	1.00[CEU][hapmap]
rs16958077	1.00[CEU][hapmap]
rs16958121	1.00[CEU][hapmap]
rs16958278	1.00[CEU][hapmap]
rs16958306	1.00[CEU][hapmap]
rs2052610	1.00[CEU][hapmap]
rs4780186	1.00[CEU][hapmap]
rs6495303	1.00[CEU][hapmap]
rs6495332	1.00[CEU][hapmap]
rs7171854	1.00[CEU][hapmap]
rs7172238	1.00[CEU][hapmap]
rs7172406	1.00[CEU][hapmap]
rs7181961	1.00[CEU][hapmap]
rs7183165	1.00[CEU][hapmap]
rs8026540	1.00[CEU][hapmap]
rs8026717	1.00[CEU][hapmap]
rs8041406	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34236800-34277200	Weak transcription	Left Ventricle	heart
2	chr15:34238000-34282400	Weak transcription	Ovary	ovary
3	chr15:34252000-34256000	Weak transcription	Aorta	Aorta
4	chr15:34252600-34260400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr15:34255200-34256000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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