Variant report

Variant	rs11854992
Chromosome Location	chr15:34211982-34211983
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1529542	1.00[CEU][hapmap]
rs16958077	1.00[CEU][hapmap]
rs16958121	1.00[CEU][hapmap]
rs16958278	1.00[CEU][hapmap]
rs16958306	1.00[CEU][hapmap]
rs2052610	1.00[CEU][hapmap]
rs4780186	1.00[CEU][hapmap]
rs55845386	0.81[AFR][1000 genomes]
rs6495303	1.00[CEU][hapmap]
rs6495332	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6495403	1.00[CEU][hapmap]
rs7171854	1.00[CEU][hapmap]
rs7172238	1.00[CEU][hapmap]
rs7172406	1.00[CEU][hapmap]
rs7181961	1.00[CEU][hapmap]
rs7183165	1.00[CEU][hapmap]
rs74008367	1.00[AMR][1000 genomes]
rs8026540	1.00[CEU][hapmap]
rs8026717	1.00[CEU][hapmap]
rs8041406	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv903984	chr15:34174066-34238804	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv977841	chr15:34204739-34224060	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34199600-34220800	Weak transcription	Right Atrium	heart
2	chr15:34208200-34220600	Weak transcription	Psoas Muscle	Psoas
3	chr15:34208400-34215800	Weak transcription	Esophagus	oesophagus
4	chr15:34208400-34225600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:34208600-34218400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:34208600-34221400	Weak transcription	Left Ventricle	heart
7	chr15:34211600-34212200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr15:34211800-34212400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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