Variant report

Variant	rs10163048
Chromosome Location	chr15:34049877-34049878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10519889	1.00[MEX][hapmap]
rs16957066	1.00[MEX][hapmap]
rs16957945	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs16957951	0.84[ASW][hapmap];1.00[MEX][hapmap];0.91[AFR][1000 genomes]
rs6495303	1.00[MEX][hapmap]
rs7177269	1.00[MEX][hapmap]
rs8023957	1.00[MEX][hapmap]
rs8026540	1.00[MEX][hapmap]
rs8030964	1.00[MEX][hapmap]
rs8041171	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34034800-34050400	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:34042600-34050200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:34046600-34051200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:34047200-34050400	Weak transcription	Brain Anterior Caudate	brain
5	chr15:34048200-34050800	Strong transcription	Stomach Smooth Muscle	stomach
6	chr15:34048200-34051000	Strong transcription	Fetal Muscle Leg	muscle
7	chr15:34048600-34050400	Strong transcription	Aorta	Aorta
8	chr15:34048600-34051000	Strong transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:34048600-34051200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:34048800-34051200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr15:34048800-34051600	Strong transcription	Fetal Muscle Trunk	muscle
12	chr15:34049000-34050600	Strong transcription	Fetal Stomach	stomach
13	chr15:34049200-34050200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:34049200-34057000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr15:34049800-34050200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr15:34049800-34050800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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