Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33870139..33872552-chr17:56728731..56731471,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10163048	1.00[MEX][hapmap]
rs11072550	1.00[CEU][hapmap]
rs11852941	1.00[CEU][hapmap]
rs16957066	1.00[MEX][hapmap]
rs16957945	1.00[MEX][hapmap]
rs16957951	1.00[MEX][hapmap]
rs16971146	1.00[CEU][hapmap]
rs16972317	1.00[ASW][hapmap]
rs16973185	1.00[CEU][hapmap]
rs2596192	1.00[MEX][hapmap]
rs56132512	0.85[AFR][1000 genomes]
rs59768872	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs604934	0.81[AFR][1000 genomes]
rs619196	0.88[YRI][hapmap]
rs666342	0.81[AFR][1000 genomes]
rs7167772	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs7178813	0.88[AFR][1000 genomes]
rs7183338	0.88[AFR][1000 genomes]
rs753945	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs8030964	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs8032721	1.00[CEU][hapmap]
rs8039203	1.00[YRI][hapmap]
rs8041171	1.00[ASW][hapmap];1.00[MEX][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes]
rs968275	1.00[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8023957	TDO2	trans	lymphoblastoid	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr15:33846400-33872000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:33858000-33921200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr15:33858600-33895200	Weak transcription	Fetal Muscle Leg	muscle
5	chr15:33859200-33923200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:33871400-33872200	Weak transcription	Ovary	ovary

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