Variant report

Variant	rs11852941
Chromosome Location	chr15:33880730-33880731
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11072550	1.00[CEU][hapmap]
rs16971146	1.00[CEU][hapmap]
rs16973185	1.00[CEU][hapmap];0.80[AFR][1000 genomes]
rs8023957	1.00[CEU][hapmap]
rs8032721	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv431382	chr15:33873751-33915088	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33858000-33921200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:33858600-33895200	Weak transcription	Fetal Muscle Leg	muscle
3	chr15:33859200-33923200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:33873000-33923400	Weak transcription	Brain Anterior Caudate	brain
5	chr15:33873800-33895200	Weak transcription	Aorta	Aorta
6	chr15:33874000-33884800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:33877600-33881000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:33879200-33881000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:33879400-33881000	Enhancers	NHDF-Ad	bronchial
10	chr15:33879600-33892600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:33879600-33893200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:33880200-33884000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:33880400-33881800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr15:33880400-33882800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr15:33880400-33883600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr15:33880400-33885000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr15:33880600-33881200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:33880600-33884400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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