Variant report

Variant	nsv438277
Chromosome Location	chr18:24366488-24367973
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:54 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs606771	chr18:24366488-24366489	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs572810525	chr18:24366514-24366515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs117673471	chr18:24366525-24366526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs55998839	chr18:24366541-24366542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs558666215	chr18:24366544-24366545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs73411187	chr18:24366561-24366562	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs138718844	chr18:24366585-24366586	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs76754822	chr18:24366605-24366606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs529913407	chr18:24366647-24366648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs533589298	chr18:24366733-24366734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs542125627	chr18:24366756-24366757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs571014805	chr18:24366843-24366844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs188299543	chr18:24366848-24366849	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs80145516	chr18:24366872-24366873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs142698971	chr18:24366910-24366911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs570996126	chr18:24366955-24366956	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs535609224	chr18:24366989-24366990	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs192975470	chr18:24367003-24367004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs550348523	chr18:24367023-24367024	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs554321262	chr18:24367032-24367033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs386801823	chr18:24367063-24367064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs516788	chr18:24367065-24367066	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs536933693	chr18:24367080-24367081	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs566321024	chr18:24367161-24367162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs533825916	chr18:24367165-24367166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs75021698	chr18:24367230-24367231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs576483528	chr18:24367280-24367281	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs147341252	chr18:24367331-24367332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs573379513	chr18:24367379-24367380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs79444066	chr18:24367395-24367396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs11659904	chr18:24367412-24367413	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs541738256	chr18:24367424-24367425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs11659906	chr18:24367429-24367430	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs544589379	chr18:24367432-24367433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs71352700	chr18:24367442-24367443	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs546136793	chr18:24367452-24367453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs564472581	chr18:24367514-24367515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs201767748	chr18:24367537-24367538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs531810239	chr18:24367550-24367551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs11663064	chr18:24367573-24367574	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs562252028	chr18:24367580-24367581	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs529519432	chr18:24367602-24367603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs547763980	chr18:24367634-24367635	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs549251775	chr18:24367698-24367699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs184115142	chr18:24367780-24367781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs188461372	chr18:24367792-24367793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs201135940	chr18:24367801-24367802	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs118072023	chr18:24367806-24367807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs142331270	chr18:24367822-24367823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs8087166	chr18:24367835-24367836	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Colorectal cancer	16272173	CNVD
Colorectal cancer	19150955	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Follicular lymphoma	20505157	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	18923191	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Trisomy 18 syndrome	17576883	CNVD
lymphocytic leukemia	21291569	CNVD
Barrett''s syndrome	19417022	CNVD
Ewing''s sarcoma	17952124	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Glioblastoma multiforme	21922591	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
18q deletion syndrome	19533772	CNVD
Acute myeloid leukemia	16864856	CNVD
Colorectal cancer	21102417	CNVD
Colorectal cancer	20709793	CNVD
Pancreatic cancer	21811562	CNVD
Basal cell lymphoma	21115979	CNVD
Mucosa-associated lymphoid tissue lymphomas	21459788	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
colon cancer	17210682	CNVD
Breast cancer	21785460	CNVD
Hepatocellular carcinoma	16750200	CNVD
Prostate cancer	16573809	CNVD
Autism	16446308	CNVD
Colorectal cancer	19359472	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	18056178	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Metanephric adenoma	20802469	CNVD
small cell lung cancer	20016488	CNVD
Sudden cardiac death	19188705	CNVD
Breast cancer	17133270	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Colorectal cancer	16774939	CNVD
Colorectal cancer	21297112	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	21645411	CNVD
Glioblastoma multiforme	17002787	CNVD
Cancer	21183584	CNVD
Breast cancer	17603634	CNVD
Thyroid cancer	19087340	CNVD
Urothelial carcinoma	21177765	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24364600-24369000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr18:24364800-24371600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:24365400-24372600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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