Variant report

Variant	rs516788
Chromosome Location	chr18:24367065-24367066
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1435420	0.81[ASN][1000 genomes]
rs1435421	0.84[ASN][1000 genomes]
rs1786651	0.84[ASN][1000 genomes]
rs473026	0.97[ASN][1000 genomes]
rs487455	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs495970	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs511896	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs536381	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs536522	0.97[ASN][1000 genomes]
rs576388	0.86[ASN][1000 genomes]
rs583692	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs606771	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs621765	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs656741	0.92[EUR][1000 genomes]
rs8089978	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761995	chr18:24214286-24502570	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv438277	chr18:24366488-24367973	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24364600-24369000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr18:24364800-24371600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:24365400-24372600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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