Variant report

Variant	rs8089978
Chromosome Location	chr18:24373430-24373431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1435420	0.93[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1435421	0.89[ASN][1000 genomes]
rs1786651	0.89[ASN][1000 genomes]
rs487455	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs495970	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs511896	0.92[EUR][1000 genomes]
rs516788	0.89[EUR][1000 genomes]
rs536381	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs583692	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs606771	0.90[EUR][1000 genomes]
rs621765	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs647839	0.89[ASN][1000 genomes]
rs656741	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761995	chr18:24214286-24502570	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24371600-24374600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:24372400-24374400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr18:24372800-24374200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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