Variant report

Variant	nsv457122
Chromosome Location	chr15:42948862-43062548
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1471)
CpG islands
(count:1225)
Chromatin interactive
region (count:81)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:1471 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:43008561-43008586	HepG2	liver:	n/a	n/a
2	ARID3A	chr15:43000560-43000618	K562	blood:	n/a	n/a
3	ARID3A	chr15:43030048-43030327	HepG2	liver:	n/a	n/a
4	ARID3A	chr15:43029205-43029320	HepG2	liver:	n/a	n/a
5	ATF2	chr15:42972346-42972581	GM12878	blood:	n/a	n/a
6	ATF3	chr15:43029026-43029443	K562	blood:	n/a	n/a
7	BACH1	chr15:42999321-42999521	K562	blood:	n/a	n/a
8	BACH1	chr15:43029146-43029218	H1-hESC	embryonic stem cell:	n/a	n/a
9	BACH1	chr15:43049923-43049944	K562	blood:	n/a	n/a
10	BATF	chr15:42972290-42972588	GM12878	blood:	n/a	chr15:42972447-42972458 chr15:42972338-42972347
11	BATF	chr15:42972238-42972646	GM12878	blood:	n/a	chr15:42972447-42972458 chr15:42972338-42972347
12	BHLHE40	chr15:43029125-43029621	GM12878	blood:	n/a	chr15:43029327-43029343
13	BHLHE40	chr15:43029194-43029684	K562	blood:	n/a	chr15:43029327-43029343
14	BRCA1	chr15:43029093-43029475	Hela-S3	cervix:	n/a	n/a
15	CBX3	chr15:43052557-43052820	K562	blood:	n/a	n/a
16	CBX3	chr15:43029963-43030363	K562	blood:	n/a	n/a
17	CBX3	chr15:43052533-43052726	K562	blood:	n/a	n/a
18	CBX3	chr15:43029043-43029634	K562	blood:	n/a	n/a
19	CBX3	chr15:42980028-42980218	K562	blood:	n/a	n/a
20	CBX3	chr15:43042485-43042850	K562	blood:	n/a	n/a
21	CBX3	chr15:42979985-42980297	K562	blood:	n/a	n/a
22	CCNT2	chr15:43028482-43029698	K562	blood:	n/a	n/a
23	CEBPB	chr15:42991244-42991562	K562	blood:	n/a	chr15:42991439-42991450
24	CEBPB	chr15:42959988-42960181	HepG2	liver:	n/a	chr15:42960026-42960037
25	CEBPB	chr15:42991253-42991568	IMR90	lung:	n/a	chr15:42991439-42991450
26	CEBPB	chr15:42971652-42971803	Hela-S3	cervix:	n/a	n/a
27	CEBPB	chr15:42991282-42991562	HepG2	liver:	n/a	chr15:42991439-42991450
28	CEBPB	chr15:42991299-42991445	Hela-S3	cervix:	n/a	n/a
29	CEBPB	chr15:43006914-43007205	HepG2	liver:	n/a	chr15:43007037-43007048
30	CEBPB	chr15:43030134-43030327	Hela-S3	cervix:	n/a	n/a
31	CEBPB	chr15:43029236-43029574	Hela-S3	cervix:	n/a	n/a
32	CEBPB	chr15:43006909-43007151	IMR90	lung:	n/a	chr15:43007037-43007048
33	CEBPB	chr15:43013259-43013503	HepG2	liver:	n/a	n/a
34	CEBPB	chr15:42991266-42991507	A549	lung:	n/a	chr15:42991439-42991450
35	CEBPB	chr15:42978418-42978648	HepG2	liver:	n/a	n/a
36	CEBPB	chr15:42996684-42996880	A549	lung:	n/a	n/a
37	CEBPD	chr15:43029131-43029486	HepG2	liver:	n/a	n/a
38	CHD1	chr15:42963090-42963199	GM12878	blood:	n/a	n/a
39	CHD1	chr15:43028787-43029166	GM12878	blood:	n/a	n/a
40	CHD2	chr15:43029167-43029173	H1-hESC	embryonic stem cell:	n/a	n/a
41	CHD2	chr15:43029116-43029266	K562	blood:	n/a	n/a
42	CHD2	chr15:43029073-43029293	HepG2	liver:	n/a	n/a
43	CHD2	chr15:43028887-43029640	Hela-S3	cervix:	n/a	n/a
44	CHD2	chr15:43028738-43028847	HepG2	liver:	n/a	n/a
45	CHD2	chr15:43018354-43018365	Hela-S3	cervix:	n/a	n/a
46	CHD2	chr15:43029474-43029674	GM12878	blood:	n/a	n/a
47	CHD2	chr15:43029865-43030006	K562	blood:	n/a	n/a
48	CHD2	chr15:43029402-43029581	H1-hESC	embryonic stem cell:	n/a	n/a
49	CHD2	chr15:43029512-43029626	HepG2	liver:	n/a	n/a
50	CREB1	chr15:43028993-43029648	K562	blood:	n/a	n/a

(count:1225 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:43029438-43029488	GM19239	blood:	n/a
2	chr15:43029202-43029252	T-47D	breast:	n/a
3	chr15:43025164-43025214	RPTEC	kidney:	n/a
4	chr15:43032408-43032458	NT2-D1	testis:	n/a
5	chr15:43029438-43029488	AG04450	lung:	fetal
6	chr15:43029438-43029488	GM19239	blood:	n/a
7	chr15:43029202-43029252	T-47D	breast:	n/a
8	chr15:43025164-43025214	RPTEC	kidney:	n/a
9	chr15:43032408-43032458	NT2-D1	testis:	n/a
10	chr15:43029438-43029488	AG04450	lung:	fetal
11	chr15:43024914-43024964	Jurkat	blood:	n/a
12	chr15:43029799-43029849	GM19239	blood:	n/a
13	chr15:43012152-43012202	CMK	blood:	n/a
14	chr15:43029432-43029482	GM12878	blood:	n/a
15	chr15:43029432-43029482	SAEC	small airway:	n/a
16	chr15:43029202-43029252	HL-60	blood:	n/a
17	chr15:43024914-43024964	PFSK-1	brain:	n/a
18	chr15:43027820-43027870	HCT-116	colon:	n/a
19	chr15:43028916-43028966	HUVEC	blood vessel:	n/a
20	chr15:43016527-43016577	Jurkat	blood:	n/a
21	chr15:43027820-43027870	A549	lung:	n/a
22	chr15:43029558-43029608	NB4	blood:	n/a
23	chr15:43027820-43027870	HepG2	liver:	n/a
24	chr15:43021976-43022026	RPTEC	kidney:	n/a
25	chr15:43028463-43028513	AG04449	skin:	fetal
26	chr15:43027820-43027870	ovcar-3	ovarian:	n/a
27	chr15:43032408-43032458	NHDF-neo	bronchial:	n/a
28	chr15:43028916-43028966	HCT-116	colon:	n/a
29	chr15:43029432-43029482	SK-N-SH	brain:	n/a
30	chr15:43028463-43028513	AG04450	lung:	fetal
31	chr15:43029242-43029292	PrEC	prostate:	n/a
32	chr15:43029558-43029608	RPTEC	kidney:	n/a
33	chr15:43028916-43028966	T-47D	breast:	n/a
34	chr15:43028916-43028966	Caco-2	colon:	n/a
35	chr15:43029643-43029693	AG09319	gingival:	n/a
36	chr15:43029432-43029482	HMEC	breast:	n/a
37	chr15:43029558-43029608	GM12878	blood:	n/a
38	chr15:43029438-43029488	BE2_C	brain:	n/a
39	chr15:43012152-43012202	NT2-D1	testis:	n/a
40	chr15:43024914-43024964	HEEpiC	esophagus:	n/a
41	chr15:43029643-43029693	Hepatocyte	liver:	n/a
42	chr15:43029438-43029488	ECC-1	luminal epithelium:	n/a
43	chr15:43030817-43030867	ovcar-3	ovarian:	n/a
44	chr15:43032408-43032458	ECC-1	luminal epithelium:	n/a
45	chr15:43030817-43030867	HL-60	blood:	n/a
46	chr15:43022829-43022879	AG04450	lung:	fetal
47	chr15:43012152-43012202	HMEC	breast:	n/a
48	chr15:43029643-43029693	NHBE	bronchial:	n/a
49	chr15:43024914-43024964	NHBE	bronchial:	n/a
50	chr15:43029438-43029488	NT2-D1	testis:	n/a

(count:81 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr15:43014717..43017348-chr15:43028002..43029875,2	MCF-7	breast:
2	chr15:43028376..43030803-chr15:43034543..43038409,3	K562	blood:
3	chr15:42867986..42870891-chr15:43024060..43026740,2	K562	blood:
4	chr15:43032504..43034009-chr15:43211732..43214005,2	MCF-7	breast:
5	chr15:42996049..42999040-chr15:43025539..43027255,2	K562	blood:
6	chr15:42964822..42967725-chr15:42973994..42976246,2	K562	blood:
7	chr15:43004420..43008133-chr15:43008696..43011545,3	K562	blood:
8	chr15:42996321..42997267-chr15:43577508..43578431,6	K562	blood:
9	chr15:43024047..43026757-chr15:43034697..43037406,2	K562	blood:
10	chr15:42951576..42953630-chr15:42956169..42958908,3	K562	blood:
11	chr15:43038879..43041116-chr15:43044184..43047374,3	K562	blood:
12	chr15:43011390..43013542-chr15:43022490..43025034,3	K562	blood:
13	chr15:43005044..43007388-chr15:43020446..43022660,2	K562	blood:
14	chr15:43044008..43046393-chr15:43047773..43049596,2	K562	blood:
15	chr15:42983549..42985784-chr15:42989459..42991340,2	K562	blood:
16	chr15:42960459..42961182-chr6:158277485..158278191,2	MCF-7	breast:
17	chr15:43028764..43029357-chr7:100183650..100184158,2	Hela-S3	cervix:
18	chr15:43029097..43029683-chr8:22102019..22102704,2	HCT-116	colon:
19	chr15:43014319..43018768-chr15:43027782..43030873,5	MCF-7	breast:
20	chr15:42960672..42962590-chr15:42963179..42966511,3	K562	blood:
21	chr15:42996313..42997182-chr15:43218578..43219161,2	MCF-7	breast:
22	chr15:43038489..43040634-chr15:43041154..43044012,2	K562	blood:
23	chr15:43042004..43045508-chr15:43046491..43050155,3	K562	blood:
24	chr15:42996508..42997091-chr15:43015306..43015832,2	MCF-7	breast:
25	chr15:42996644..42997222-chr15:43014554..43015613,3	MCF-7	breast:
26	chr15:43014319..43018768-chr15:43027782..43030873,5	MCF-7	breast:
27	chr15:43033816..43036237-chr15:43039881..43041470,2	K562	blood:
28	chr15:43025909..43027534-chr15:43242943..43244599,2	K562	blood:
29	chr15:42967308..42970278-chr15:42981149..42982877,2	K562	blood:
30	chr15:43007397..43009798-chr15:43011681..43013458,2	MCF-7	breast:
31	chr15:42996508..42997091-chr15:43015306..43015832,2	MCF-7	breast:
32	chr15:43010693..43013698-chr15:43016416..43019349,5	K562	blood:
33	chr15:43033816..43036237-chr15:43039881..43041470,2	K562	blood:
34	chr15:42960672..42962590-chr15:42963179..42966511,3	K562	blood:
35	chr15:43034608..43036294-chr15:43036367..43039300,2	K562	blood:
36	chr15:42972332..42975595-chr15:42981286..42984253,3	K562	blood:
37	chr15:43020195..43022907-chr15:43026273..43029275,3	MCF-7	breast:
38	chr15:43024047..43026757-chr15:43034697..43037406,2	K562	blood:
39	chr15:43038489..43040634-chr15:43041154..43044012,2	K562	blood:
40	chr15:43005044..43007388-chr15:43020446..43022660,2	K562	blood:
41	chr15:42972306..42975288-chr15:42982753..42985416,2	K562	blood:
42	chr15:43002992..43005620-chr15:43005783..43008129,2	K562	blood:
43	chr15:42957477..42963934-chr15:42964860..42973083,9	K562	blood:
44	chr15:42985508..42988057-chr15:43016423..43018014,2	K562	blood:
45	chr15:42983652..42985690-chr15:42986702..42989327,2	K562	blood:
46	chr15:42964822..42967725-chr15:42973994..42976246,3	K562	blood:
47	chr15:43015023..43015967-chr15:43218682..43219556,3	MCF-7	breast:
48	chr15:42996634..42997289-chr15:43496048..43497151,3	MCF-7	breast:
49	chr15:42957477..42963934-chr15:42964860..42973083,9	K562	blood:
50	chr15:43007694..43010580-chr15:43015984..43019053,4	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STARD9-1	chr15:43034200-43035400	ENSG00000246283.2
2	lnc-STARD9-1	chr15:43034200-43034395	ENSG00000246283.2
3	lnc-STARD9-1	chr15:43033651-43033761	ENSG00000246283.2
4	lnc-CDAN1-1	chr15:43033744-43035546	NONHSAT042032
5	lnc-STARD9-1	chr15:43032946-43033761	ENSG00000246283.2
6	lnc-STARD9-1	chr15:43031316-43031433	ENSG00000246283.2

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	CDAN1	hsa-miR-34a-5p	chr15:43016541-43016566

Variant related genes	Relation type
ENSG00000246283	TF binding region
STARD9	TF binding region
ENSG00000239025	TF binding region
CDAN1	TF binding region
ENSG00000246283	CpG island
STARD9	CpG island
ENSG00000239025	CpG island
CDAN1	CpG island
ENSG00000159433	chromatin interactions
ENSG00000077454	chromatin interactions
ENSG00000140326	chromatin interactions
ENSG00000208037	chromatin interactions
ENSG00000128881	chromatin interactions
ENSG00000246283	chromatin interactions
ENSG00000106336	chromatin interactions
ENSG00000168495	chromatin interactions

Extended variants
information (count: 4547 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:4547 , 50 per page) page: 1 2 3 4 5 6 7 ... 91

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs8043472	chr15:42948862-42948863	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs531654468	chr15:42948876-42948877	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs376389828	chr15:42948896-42948897	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs550011655	chr15:42948908-42948909	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs373573021	chr15:42948913-42948914	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs79533437	chr15:42948926-42948927	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs142547271	chr15:42948936-42948937	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs548057502	chr15:42948971-42948972	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs553318478	chr15:42948972-42948973	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs572428417	chr15:42948976-42948977	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs535068320	chr15:42949070-42949071	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs558274671	chr15:42949127-42949128	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs578074913	chr15:42949155-42949156	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs193042628	chr15:42949211-42949212	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs369945190	chr15:42949223-42949224	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs71431857	chr15:42949276-42949277	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs574171092	chr15:42949290-42949291	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs370936012	chr15:42949312-42949313	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs542874709	chr15:42949334-42949335	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs574710779	chr15:42949462-42949463	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs559624359	chr15:42949492-42949493	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs184967251	chr15:42949512-42949513	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs544643109	chr15:42949553-42949554	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs564811237	chr15:42949554-42949555	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs76610716	chr15:42949558-42949559	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs79383730	chr15:42949559-42949560	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs530655116	chr15:42949687-42949688	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs187380729	chr15:42949690-42949691	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs567419959	chr15:42949693-42949694	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs73408619	chr15:42949817-42949818	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs546868534	chr15:42949856-42949857	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs566814106	chr15:42949870-42949871	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs535002095	chr15:42949901-42949902	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs558161561	chr15:42949902-42949903	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs145835652	chr15:42949923-42949924	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs537520947	chr15:42949928-42949929	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs557186321	chr15:42949942-42949943	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs536252196	chr15:42949957-42949958	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs138751669	chr15:42949960-42949961	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs542862323	chr15:42950060-42950061	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs553239935	chr15:42950091-42950092	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs573233164	chr15:42950154-42950155	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs548165170	chr15:42950168-42950169	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs569670378	chr15:42950171-42950172	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs4924690	chr15:42950219-42950220	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs530439012	chr15:42950234-42950235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs4924691	chr15:42950237-42950238	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs560821527	chr15:42950256-42950257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs192163499	chr15:42950272-42950273	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs545478797	chr15:42950274-42950275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	20164920	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Cancer	21129771	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21045282	CNVD
Breast cancer	22032731	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Renal cell carcinoma	18765545	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD

Chromatin state (count:2690 , 50 per page) page: 1 2 3 4 5 6 7 ... 54

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42898000-42967800	Weak transcription	Fetal Intestine Small	intestine
2	chr15:42908800-43015000	Weak transcription	Fetal Kidney	kidney
3	chr15:42909600-42966400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:42923000-42958200	Weak transcription	Hela-S3	cervix
5	chr15:42925200-42966000	Weak transcription	NH-A	brain
6	chr15:42925200-42966800	Weak transcription	NHLF	lung
7	chr15:42925600-42961000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:42928200-42973600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr15:42928200-42974000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:42930600-42964000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:42930800-42957400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:42931200-42949800	Weak transcription	Fetal Heart	heart
13	chr15:42931200-42954600	Weak transcription	Placenta	Placenta
14	chr15:42931200-42963400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:42931400-42955800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr15:42931600-42953600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:42931600-42955400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:42931800-42955000	Weak transcription	Fetal Lung	lung
19	chr15:42931800-42955000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr15:42931800-42955600	Weak transcription	Lung	lung
21	chr15:42931800-42957200	Weak transcription	Primary B cells from cord blood	blood
22	chr15:42931800-42958200	Weak transcription	Brain Angular Gyrus	brain
23	chr15:42931800-42968000	Weak transcription	HSMM	muscle
24	chr15:42932000-42958400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr15:42932200-42966200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr15:42932400-42960000	Weak transcription	Primary T cells from cord blood	blood
27	chr15:42932600-42953200	Weak transcription	Fetal Intestine Large	intestine
28	chr15:42932600-42955400	Weak transcription	Aorta	Aorta
29	chr15:42932800-42953000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:42932800-42954000	Weak transcription	Brain Germinal Matrix	brain
31	chr15:42934800-42953000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:42939200-42961200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr15:42940400-42967800	Weak transcription	HepG2	liver
34	chr15:42942600-42950000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:42942800-42955000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:42942800-42955400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:42942800-42955600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:42942800-42955800	Weak transcription	Brain Substantia Nigra	brain
39	chr15:42942800-42967200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr15:42942800-42973600	Weak transcription	Psoas Muscle	Psoas
41	chr15:42943000-42957600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr15:42943400-42950000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr15:42945000-42953200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr15:42945000-42955000	Weak transcription	Brain Hippocampus Middle	brain
45	chr15:42945000-42955400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr15:42945200-42950400	Weak transcription	Fetal Stomach	stomach
47	chr15:42945200-42951000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr15:42945200-42955000	Weak transcription	Left Ventricle	heart
49	chr15:42945200-42955400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr15:42945200-42973400	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links