Variant report

Variant	rs542862323
Chromosome Location	chr15:42950060-42950061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42942904..42945728-chr15:42947943..42950314,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv457122	chr15:42948862-43062548	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv569238	chr15:42948862-43062548	Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42898000-42967800	Weak transcription	Fetal Intestine Small	intestine
2	chr15:42908800-43015000	Weak transcription	Fetal Kidney	kidney
3	chr15:42909600-42966400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:42923000-42958200	Weak transcription	Hela-S3	cervix
5	chr15:42925200-42966000	Weak transcription	NH-A	brain
6	chr15:42925200-42966800	Weak transcription	NHLF	lung
7	chr15:42925600-42961000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:42928200-42973600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr15:42928200-42974000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:42930600-42964000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:42930800-42957400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:42931200-42954600	Weak transcription	Placenta	Placenta
13	chr15:42931200-42963400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:42931400-42955800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr15:42931600-42953600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:42931600-42955400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:42931800-42955000	Weak transcription	Fetal Lung	lung
18	chr15:42931800-42955000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr15:42931800-42955600	Weak transcription	Lung	lung
20	chr15:42931800-42957200	Weak transcription	Primary B cells from cord blood	blood
21	chr15:42931800-42958200	Weak transcription	Brain Angular Gyrus	brain
22	chr15:42931800-42968000	Weak transcription	HSMM	muscle
23	chr15:42932000-42958400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:42932200-42966200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr15:42932400-42960000	Weak transcription	Primary T cells from cord blood	blood
26	chr15:42932600-42953200	Weak transcription	Fetal Intestine Large	intestine
27	chr15:42932600-42955400	Weak transcription	Aorta	Aorta
28	chr15:42932800-42953000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr15:42932800-42954000	Weak transcription	Brain Germinal Matrix	brain
30	chr15:42934800-42953000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr15:42939200-42961200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr15:42940400-42967800	Weak transcription	HepG2	liver
33	chr15:42942800-42955000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:42942800-42955400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr15:42942800-42955600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:42942800-42955800	Weak transcription	Brain Substantia Nigra	brain
37	chr15:42942800-42967200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr15:42942800-42973600	Weak transcription	Psoas Muscle	Psoas
39	chr15:42943000-42957600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr15:42945000-42953200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr15:42945000-42955000	Weak transcription	Brain Hippocampus Middle	brain
42	chr15:42945000-42955400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr15:42945200-42950400	Weak transcription	Fetal Stomach	stomach
44	chr15:42945200-42951000	Weak transcription	Fetal Muscle Trunk	muscle
45	chr15:42945200-42955000	Weak transcription	Left Ventricle	heart
46	chr15:42945200-42955400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:42945200-42973400	Weak transcription	Thymus	Thymus
48	chr15:42945400-42951200	Weak transcription	Fetal Muscle Leg	muscle
49	chr15:42945400-42954800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr15:42945400-42957000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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