Variant report

Variant	nsv510759
Chromosome Location	chr19:21664791-21723191
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1006)
CpG islands
(count:1038)
Chromatin interactive
region (count:12)
LncRNA
region (count:66)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1006 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:21688183-21688449	HepG2	liver:	n/a	n/a
2	ARID3A	chr19:21665809-21666009	K562	blood:	n/a	n/a
3	ARID3A	chr19:21689384-21689643	HepG2	liver:	n/a	n/a
4	ARID3A	chr19:21688150-21688402	K562	blood:	n/a	n/a
5	ATF1	chr19:21676045-21676231	K562	blood:	n/a	n/a
6	ATF1	chr19:21688140-21688844	K562	blood:	n/a	n/a
7	ATF2	chr19:21688277-21688624	H1-hESC	embryonic stem cell:	n/a	n/a
8	BACH1	chr19:21688505-21688907	H1-hESC	embryonic stem cell:	n/a	n/a
9	BACH1	chr19:21665696-21666180	K562	blood:	n/a	n/a
10	BCLAF1	chr19:21688222-21688771	GM12878	blood:	n/a	n/a
11	BHLHE40	chr19:21665697-21666181	GM12878	blood:	n/a	chr19:21665881-21665897
12	BHLHE40	chr19:21665572-21666181	K562	blood:	n/a	chr19:21665881-21665897
13	BHLHE40	chr19:21693031-21693169	K562	blood:	n/a	n/a
14	BHLHE40	chr19:21688113-21689201	K562	blood:	n/a	n/a
15	BHLHE40	chr19:21688202-21688938	HepG2	liver:	n/a	n/a
16	BHLHE40	chr19:21688144-21689372	GM12878	blood:	n/a	n/a
17	BHLHE40	chr19:21675834-21675944	HepG2	liver:	n/a	n/a
18	BRCA1	chr19:21665696-21666181	HepG2	liver:	n/a	n/a
19	BRCA1	chr19:21665792-21666180	GM12878	blood:	n/a	n/a
20	BRCA1	chr19:21665696-21666178	Hela-S3	cervix:	n/a	n/a
21	CBX3	chr19:21665672-21665913	K562	blood:	n/a	n/a
22	CBX3	chr19:21702289-21702654	K562	blood:	n/a	n/a
23	CBX3	chr19:21702263-21702592	K562	blood:	n/a	n/a
24	CCNT2	chr19:21691185-21691385	K562	blood:	n/a	n/a
25	CCNT2	chr19:21688275-21688660	K562	blood:	n/a	chr19:21688608-21688617
26	CCNT2	chr19:21665697-21666182	K562	blood:	n/a	chr19:21666137-21666146
27	CEBPB	chr19:21688461-21689067	K562	blood:	n/a	chr19:21688851-21688862 chr19:21688852-21688863 chr19:21688851-21688864
28	CEBPB	chr19:21677378-21677678	Hela-S3	cervix:	n/a	chr19:21677512-21677523
29	CEBPB	chr19:21688394-21689023	ECC-1	luminal epithelium:	n/a	chr19:21688851-21688862 chr19:21688852-21688863 chr19:21688851-21688864
30	CEBPB	chr19:21688590-21689217	MCF-7	breast:	n/a	chr19:21688851-21688862 chr19:21688852-21688863 chr19:21688851-21688864
31	CEBPB	chr19:21715858-21715920	H1-hESC	embryonic stem cell:	n/a	n/a
32	CEBPB	chr19:21689428-21689789	K562	blood:	n/a	n/a
33	CEBPB	chr19:21715804-21716043	K562	blood:	n/a	n/a
34	CEBPB	chr19:21673848-21674339	IMR90	lung:	n/a	n/a
35	CEBPB	chr19:21704016-21704332	IMR90	lung:	n/a	chr19:21704174-21704185
36	CEBPB	chr19:21671633-21671975	HepG2	liver:	n/a	chr19:21671809-21671820
37	CEBPB	chr19:21675692-21676627	HepG2	liver:	n/a	n/a
38	CEBPB	chr19:21677462-21677554	H1-hESC	embryonic stem cell:	n/a	chr19:21677512-21677523
39	CEBPB	chr19:21680910-21681535	A549	lung:	n/a	n/a
40	CEBPB	chr19:21684826-21684853	HepG2	liver:	n/a	n/a
41	CEBPB	chr19:21704019-21704348	HepG2	liver:	n/a	chr19:21704174-21704185
42	CEBPB	chr19:21681313-21681520	K562	blood:	n/a	n/a
43	CEBPB	chr19:21671119-21671382	IMR90	lung:	n/a	n/a
44	CEBPB	chr19:21680943-21681535	HepG2	liver:	n/a	n/a
45	CEBPB	chr19:21674029-21674310	MCF-7	breast:	n/a	n/a
46	CEBPB	chr19:21671088-21671247	K562	blood:	n/a	n/a
47	CEBPB	chr19:21679254-21680203	HepG2	liver:	n/a	n/a
48	CEBPB	chr19:21680932-21681532	IMR90	lung:	n/a	n/a
49	CEBPB	chr19:21670534-21671976	A549	lung:	n/a	chr19:21671809-21671820
50	CEBPB	chr19:21675725-21676316	A549	lung:	n/a	n/a

(count:1038 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:21666788-21666838	SKMC	muscle:	n/a
2	chr19:21666788-21666838	SKMC	muscle:	n/a
3	chr19:21688905-21688955	LNCaP	prostate:	n/a
4	chr19:21687792-21687842	SK-N-SH	brain:	n/a
5	chr19:21686146-21686196	AG10803	skin:	n/a
6	chr19:21686146-21686196	HCF	heart:	n/a
7	chr19:21688905-21688955	HPAEpiC	pulmonary alveolar:	n/a
8	chr19:21688828-21688878	CMK	blood:	n/a
9	chr19:21667706-21667756	AoSMC	blood vessel:	n/a
10	chr19:21688397-21688447	HMEC	breast:	n/a
11	chr19:21687300-21687350	Jurkat	blood:	n/a
12	chr19:21688397-21688447	AG09319	gingival:	n/a
13	chr19:21688519-21688569	HNPCEpiC	eye:	n/a
14	chr19:21666098-21666148	HCF	heart:	n/a
15	chr19:21686146-21686196	PFSK-1	brain:	n/a
16	chr19:21666552-21666602	ProgFib	skin:	n/a
17	chr19:21687792-21687842	BJ	skin:	n/a
18	chr19:21667706-21667756	ovcar-3	ovarian:	n/a
19	chr19:21688739-21688789	GM06990	blood:	n/a
20	chr19:21688519-21688569	GM12892	blood:	n/a
21	chr19:21686146-21686196	BJ	skin:	n/a
22	chr19:21688397-21688447	LNCaP	prostate:	n/a
23	chr19:21666788-21666838	BE2_C	brain:	n/a
24	chr19:21688519-21688569	ovcar-3	ovarian:	n/a
25	chr19:21688304-21688354	AG04450	lung:	fetal
26	chr19:21688304-21688354	Hepatocyte	liver:	n/a
27	chr19:21666552-21666602	HCF	heart:	n/a
28	chr19:21666552-21666602	BE2_C	brain:	n/a
29	chr19:21666552-21666602	SKMC	muscle:	n/a
30	chr19:21666552-21666602	AG04450	lung:	fetal
31	chr19:21687300-21687350	U87	brain:	n/a
32	chr19:21688397-21688447	Hepatocyte	liver:	n/a
33	chr19:21688647-21688697	HRE	kidney:	n/a
34	chr19:21666788-21666838	AG09309	skin:	n/a
35	chr19:21687300-21687350	AG04449	skin:	fetal
36	chr19:21687300-21687350	BJ	skin:	n/a
37	chr19:21688304-21688354	NT2-D1	testis:	n/a
38	chr19:21688304-21688354	SK-N-SH_RA	brain:	n/a
39	chr19:21688304-21688354	ECC-1	luminal epithelium:	n/a
40	chr19:21666098-21666148	GM06990	blood:	n/a
41	chr19:21688397-21688447	AG10803	skin:	n/a
42	chr19:21687300-21687350	HCF	heart:	n/a
43	chr19:21688263-21688313	SK-N-SH_RA	brain:	n/a
44	chr19:21666788-21666838	IMR90	lung:	fetal
45	chr19:21688304-21688354	MCF-7	breast:	n/a
46	chr19:21688519-21688569	HPAEpiC	pulmonary alveolar:	n/a
47	chr19:21666098-21666148	Hepatocyte	liver:	n/a
48	chr19:21688739-21688789	LNCaP	prostate:	n/a
49	chr19:21666788-21666838	SAEC	small airway:	n/a
50	chr19:21688397-21688447	NHBE	bronchial:	n/a

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:21691580..21693623-chr19:22017806..22019839,2	MCF-7	breast:
2	chr19:21665377..21666008-chr8:46940755..46941391,3	MCF-7	breast:
3	chr19:21665377..21666059-chr20:61799030..61799530,2	MCF-7	breast:
4	chr19:21691065..21693260-chr19:21696883..21699244,2	MCF-7	breast:
5	chr19:21665376..21665988-chr8:46940890..46941394,3	MCF-7	breast:
6	chr19:21686543..21689002-chr19:21689124..21690640,2	MCF-7	breast:
7	chr19:21510924..21513197-chr19:21688433..21691004,2	MCF-7	breast:
8	chr19:21680381..21683042-chr19:21685996..21688688,2	MCF-7	breast:
9	chr19:21664396..21666008-chr21:9825779..9827966,2	MCF-7	breast:
10	chr19:21687904..21690838-chr19:21705351..21707923,2	K562	blood:
11	chr19:21689678..21691656-chr19:21877431..21879636,2	K562	blood:
12	chr19:21691065..21693260-chr19:21696883..21699244,2	MCF-7	breast:

(count:66 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF429-1	chr19:21681104-21681151	NONHSAT063713
2	lnc-ZNF429-3	chr19:21688787-21688882	NONHSAT063719
3	lnc-ZNF429-3	chr19:21688443-21688576	NONHSAT063719
4	lnc-ZNF429-1	chr19:21672467-21672572	NONHSAT063711
5	lnc-ZNF429-1	chr19:21668907-21668955	NONHSAT063711
6	lnc-ZNF429-1	chr19:21671113-21671258	NONHSAT063711
7	lnc-ZNF429-1	chr19:21679454-21679524	ENSG00000248094
8	lnc-ZNF429-1	chr19:21677896-21678009	NONHSAT063711
9	lnc-ZNF429-1	chr19:21676068-21676649	NONHSAT063711
10	lnc-ZNF429-1	chr19:21673205-21673316	NONHSAT063711
11	lnc-ZNF429-1	chr19:21676922-21677133	NONHSAT063713
12	lnc-ZNF429-1	chr19:21677896-21678009	ENSG00000248094
13	lnc-ZNF429-1	chr19:21668379-21668468	ENSG00000268658.1
14	lnc-ZNF429-1	chr19:21679454-21679524	NONHSAT063711
15	lnc-ZNF429-1	chr19:21673205-21673316	NONHSAT063714
16	lnc-ZNF429-1	chr19:21673791-21673904	NONHSAT063711
17	lnc-ZNF429-1	chr19:21681001-21682100	ENSG00000268658.1
18	lnc-ZNF429-1	chr19:21681001-21682695	NONHSAT063711
19	lnc-ZNF708-11	chr19:21704145-21704698	NONHSAT063722
20	lnc-ZNF429-1	chr19:21666176-21666333	NONHSAT063711
21	lnc-ZNF429-1	chr19:21676068-21676649	NONHSAT063714
22	lnc-ZNF429-1	chr19:21668907-21668955	ENSG00000248094
23	lnc-ZNF429-1	chr19:21671113-21671258	ENSG00000248094
24	lnc-ZNF429-1	chr19:21676068-21676649	ENSG00000268658.1
25	lnc-ZNF429-1	chr19:21672467-21672572	ENSG00000248094
26	lnc-ZNF429-1	chr19:21674016-21674113	NONHSAT063711
27	lnc-ZNF429-1	chr19:21672467-21672572	ENSG00000268658.1
28	lnc-ZNF429-1	chr19:21681001-21682695	NONHSAT063715
29	lnc-ZNF429-1	chr19:21681001-21682100	ENSG00000248094
30	lnc-ZNF429-1	chr19:21679454-21679524	ENSG00000268658.1
31	lnc-ZNF429-1	chr19:21672467-21672572	NONHSAT063713
32	lnc-ZNF429-1	chr19:21676922-21677133	ENSG00000248094
33	lnc-ZNF429-1	chr19:21676068-21676649	NONHSAT063713
34	lnc-ZNF429-1	chr19:21677896-21678009	NONHSAT063714
35	lnc-ZNF429-1	chr19:21673603-21673679	ENSG00000248094
36	lnc-ZNF429-1	chr19:21668907-21668955	ENSG00000268658.1
37	lnc-ZNF429-1	chr19:21673205-21673316	ENSG00000268658.1
38	lnc-ZNF429-1	chr19:21673205-21673316	ENSG00000248094
39	lnc-ZNF429-1	chr19:21679454-21679524	NONHSAT063714
40	lnc-ZNF429-1	chr19:21671113-21671258	ENSG00000268658.1
41	lnc-ZNF429-1	chr19:21676922-21677133	ENSG00000268658.1
42	lnc-ZNF429-1	chr19:21676068-21676649	ENSG00000248094
43	lnc-ZNF429-1	chr19:21671061-21671224	NONHSAT063714
44	lnc-ZNF429-1	chr19:21673791-21673904	ENSG00000248094
45	lnc-ZNF429-1	chr19:21674011-21674113	NONHSAT063713
46	lnc-ZNF429-1	chr19:21673205-21673316	NONHSAT063713
47	lnc-ZNF429-1	chr19:21666176-21666333	ENSG00000248094
48	lnc-ZNF429-1	chr19:21672467-21672572	NONHSAT063714
49	lnc-ZNF429-1	chr19:21674016-21674113	ENSG00000268658.1
50	lnc-ZNF429-1	chr19:21677896-21678009	ENSG00000268658.1

No data

Variant related genes	Relation type
ZNF429	TF binding region
LINC00664	TF binding region
ENSG00000268705	TF binding region
ZNF429	CpG island
LINC00664	CpG island
ENSG00000268705	CpG island
ENSG00000264462	chromatin interactions
ENSG00000198521	chromatin interactions
ENSG00000197013	chromatin interactions
ENSG00000182141	chromatin interactions
ENSG00000264063	chromatin interactions
SPATS2	miRNA target sites
MED13	miRNA target sites
C2orf42	miRNA target sites
NDEL1	miRNA target sites
VPS4A	miRNA target sites
RUNX1T1	miRNA target sites
PHKA1	miRNA target sites
KCNG3	miRNA target sites
IRF2BP2	miRNA target sites
GPR180	miRNA target sites
WEE1	miRNA target sites

Extended variants
information (count: 2684 )
Associated
traits (count: 44 )

Variant overlapped rSNPs/rCNVs (count:2684 , 50 per page) page: 1 2 3 4 5 6 7 ... 54

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs536722210	chr19:21664889-21664890	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs2650778	chr19:21664988-21664989	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs144604195	chr19:21665016-21665017	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs138970312	chr19:21665034-21665035	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs558731708	chr19:21665048-21665049	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs2650779	chr19:21665080-21665081	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
7	rs113925188	chr19:21665108-21665109	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs2562458	chr19:21665127-21665128	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
9	rs193235715	chr19:21665163-21665164	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs370514697	chr19:21665205-21665206	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs575113343	chr19:21665222-21665223	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs542639839	chr19:21665263-21665264	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs369179874	chr19:21665287-21665288	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs531648091	chr19:21665360-21665361	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs183384180	chr19:21665389-21665390	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs371969744	chr19:21665444-21665445	Weak transcription ZNF genes & repeats Active TSS Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs386388733	chr19:21665456-21665457	Weak transcription ZNF genes & repeats Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs10693021	chr19:21665460-21665461	Weak transcription ZNF genes & repeats Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs56346453	chr19:21665484-21665485	Weak transcription ZNF genes & repeats Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
20	rs149425999	chr19:21665514-21665515	Weak transcription ZNF genes & repeats Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs577840470	chr19:21665521-21665522	Weak transcription ZNF genes & repeats Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs2650780	chr19:21665536-21665537	Weak transcription ZNF genes & repeats Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
23	rs186641217	chr19:21665547-21665548	Weak transcription ZNF genes & repeats Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs370328883	chr19:21665574-21665575	Weak transcription ZNF genes & repeats Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs562830021	chr19:21665599-21665600	Weak transcription ZNF genes & repeats Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs2650781	chr19:21665637-21665638	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
27	rs191436229	chr19:21665671-21665672	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs550810862	chr19:21665677-21665678	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs566806770	chr19:21665683-21665684	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs73534731	chr19:21665685-21665686	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs552320891	chr19:21665686-21665687	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs112619422	chr19:21665690-21665691	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs543256531	chr19:21665749-21665750	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs570736209	chr19:21665758-21665759	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
35	rs562351072	chr19:21665778-21665779	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs183645828	chr19:21665802-21665803	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs556567647	chr19:21665813-21665814	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs575114313	chr19:21665821-21665822	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs113676946	chr19:21665855-21665856	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs199733545	chr19:21665864-21665865	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs115252488	chr19:21665874-21665875	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs115654532	chr19:21665876-21665877	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs530848462	chr19:21665886-21665887	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs554550524	chr19:21665904-21665905	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs189737971	chr19:21665908-21665909	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs200190027	chr19:21665918-21665919	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs540344323	chr19:21665953-21665954	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
48	rs565043955	chr19:21665959-21665960	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
49	rs577089677	chr19:21665960-21665961	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
50	rs113892654	chr19:21665975-21665976	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:44)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Glioma	20126413	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Breast cancer	22522925	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:1721 , 50 per page) page: 1 2 3 4 5 6 7 ... 35

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21658000-21665600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr19:21658000-21665800	Weak transcription	Gastric	stomach
3	chr19:21658000-21665800	Weak transcription	Lung	lung
4	chr19:21658200-21665800	Weak transcription	Right Ventricle	heart
5	chr19:21658200-21667400	Weak transcription	Right Atrium	heart
6	chr19:21658200-21687800	Weak transcription	Brain Substantia Nigra	brain
7	chr19:21658400-21665800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr19:21658600-21665800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr19:21658800-21665600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr19:21658800-21665800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr19:21659000-21665800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr19:21659200-21665800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr19:21659200-21666000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr19:21659200-21668400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr19:21664200-21665800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr19:21664600-21665800	Weak transcription	Thymus	Thymus
17	chr19:21665200-21665600	Weak transcription	Placenta	Placenta
18	chr19:21665200-21665800	Weak transcription	Colonic Mucosa	Colon
19	chr19:21665400-21665600	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr19:21665400-21665600	Enhancers	Stomach Smooth Muscle	stomach
21	chr19:21665400-21665800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr19:21665400-21666400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr19:21665600-21665800	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr19:21665600-21665800	Enhancers	Adipose Nuclei	Adipose
25	chr19:21665600-21665800	Enhancers	Placenta	Placenta
26	chr19:21665600-21666000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr19:21665600-21666000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr19:21665600-21666000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr19:21665600-21666000	Enhancers	Stomach Mucosa	stomach
30	chr19:21665600-21666200	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr19:21665600-21666400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr19:21665600-21666400	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr19:21665600-21666800	Active TSS	Osteobl	bone
34	chr19:21665600-21667000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
35	chr19:21665800-21666000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr19:21665800-21666000	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr19:21665800-21666000	ZNF genes & repeats	Esophagus	oesophagus
38	chr19:21665800-21666000	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr19:21665800-21666200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
40	chr19:21665800-21666200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
41	chr19:21665800-21666200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
42	chr19:21665800-21666200	Enhancers	Primary B cells from peripheral blood	blood
43	chr19:21665800-21666200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr19:21665800-21666200	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr19:21665800-21666200	ZNF genes & repeats	Colonic Mucosa	Colon
46	chr19:21665800-21666200	ZNF genes & repeats	Gastric	stomach
47	chr19:21665800-21666200	Enhancers	Left Ventricle	heart
48	chr19:21665800-21666200	Active TSS	Psoas Muscle	Psoas
49	chr19:21665800-21666200	Active TSS	Right Ventricle	heart
50	chr19:21665800-21666200	Active TSS	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links