Variant report

Variant	rs371969744
Chromosome Location	chr19:21665444-21665445
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:21665377..21666059-chr20:61799030..61799530,2	MCF-7	breast:
2	chr19:21664396..21666008-chr21:9825779..9827966,2	MCF-7	breast:
3	chr19:21665376..21665988-chr8:46940890..46941394,3	MCF-7	breast:
4	chr19:21665377..21666008-chr8:46940755..46941391,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264063	Chromatin interaction
ENSG00000264462	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3518033	chr19:21278465-21747567	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3518034	chr19:21278465-21747567	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3414204	chr19:21301761-21839451	ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv3325271	chr19:21445407-21792817	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	esv2751783	chr19:21465822-21726337	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv3363678	chr19:21483148-21756908	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv578952	chr19:21535707-21868584	Genic enhancers Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv833782	chr19:21663537-21845722	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv510759	chr19:21664791-21723191	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21658000-21665600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr19:21658000-21665800	Weak transcription	Gastric	stomach
3	chr19:21658000-21665800	Weak transcription	Lung	lung
4	chr19:21658200-21665800	Weak transcription	Right Ventricle	heart
5	chr19:21658200-21667400	Weak transcription	Right Atrium	heart
6	chr19:21658200-21687800	Weak transcription	Brain Substantia Nigra	brain
7	chr19:21658400-21665800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr19:21658600-21665800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr19:21658800-21665600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr19:21658800-21665800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr19:21659000-21665800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr19:21659200-21665800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr19:21659200-21666000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr19:21659200-21668400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr19:21664200-21665800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr19:21664600-21665800	Weak transcription	Thymus	Thymus
17	chr19:21665200-21665600	Weak transcription	Placenta	Placenta
18	chr19:21665200-21665800	Weak transcription	Colonic Mucosa	Colon
19	chr19:21665400-21665600	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr19:21665400-21665600	Enhancers	Stomach Smooth Muscle	stomach
21	chr19:21665400-21665800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr19:21665400-21666400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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