Variant report

Variant	nsv512104
Chromosome Location	chr9:78919321-78922205
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:78917718..78920640-chr9:78922356..78925203,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:42 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs192407710	chr9:78919362-78919363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs547501146	chr9:78919370-78919371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs567404900	chr9:78919378-78919379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs2490591	chr9:78919387-78919388	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
5	rs74429468	chr9:78919403-78919404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs78423714	chr9:78919404-78919405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs183184571	chr9:78919414-78919415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs143356627	chr9:78919436-78919437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs369907883	chr9:78919446-78919447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs151296348	chr9:78919447-78919448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs2453464	chr9:78919476-78919477	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs77467230	chr9:78919569-78919570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs76644737	chr9:78919573-78919574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs77382174	chr9:78919584-78919585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs72618113	chr9:78919601-78919602	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs79872852	chr9:78919609-78919610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs77475022	chr9:78919659-78919660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs2643332	chr9:78919702-78919703	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs2643331	chr9:78919722-78919723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs397834771	chr9:78919742-78919743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs374382563	chr9:78921435-78921436	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs148955807	chr9:78921654-78921655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs368523666	chr9:78921709-78921710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs536330691	chr9:78921862-78921863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs2934990	chr9:78921870-78921871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs113884147	chr9:78921961-78921962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs3959961	chr9:78921967-78921968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs2377531	chr9:78921995-78921996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs113475761	chr9:78922003-78922004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs574583359	chr9:78922036-78922037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs539337368	chr9:78922041-78922042	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs113340740	chr9:78922048-78922049	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs543447544	chr9:78922068-78922069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs2351466	chr9:78922100-78922101	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
35	rs576723791	chr9:78922104-78922105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs143846486	chr9:78922105-78922106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs146308075	chr9:78922110-78922111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs193144243	chr9:78922124-78922125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs374753575	chr9:78922144-78922145	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs139168292	chr9:78922162-78922163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs561092075	chr9:78922198-78922199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs530147941	chr9:78922204-78922205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	20729466	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Oral cancer	21386901	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intellectual disability	22102821	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Melanoma	17363583	CNVD
Prostate cancer	18632612	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78905800-78922400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:78912400-78927800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:78913400-78935200	Weak transcription	Small Intestine	intestine
4	chr9:78916000-78925400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr9:78917400-78928000	Weak transcription	Colonic Mucosa	Colon
6	chr9:78917600-78923600	Weak transcription	Fetal Intestine Large	intestine
7	chr9:78918000-78923000	Weak transcription	Stomach Mucosa	stomach
8	chr9:78918800-78924000	Weak transcription	Fetal Intestine Small	intestine
9	chr9:78919000-78924800	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links