Variant report

Variant	nsv516087
Chromosome Location	chr11:66516049-66579572
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:302)
CpG islands
(count:366)
Chromatin interactive
region (count:76)
LncRNA
region (count:10)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:302 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr11:66557166-66557468	HepG2	liver:	n/a	n/a
2	ARID3A	chr11:66516385-66516459	K562	blood:	n/a	n/a
3	ATF2	chr11:66568358-66568947	GM12878	blood:	n/a	n/a
4	ATF2	chr11:66568305-66568903	GM12878	blood:	n/a	n/a
5	BACH1	chr11:66577922-66578523	H1-hESC	embryonic stem cell:	n/a	n/a
6	BATF	chr11:66552163-66552367	GM12878	blood:	n/a	n/a
7	BCL3	chr11:66556860-66557540	A549	lung:	n/a	n/a
8	BCLAF1	chr11:66568338-66568741	GM12878	blood:	n/a	n/a
9	BCLAF1	chr11:66568353-66568933	GM12878	blood:	n/a	n/a
10	BHLHE40	chr11:66568431-66568968	GM12878	blood:	n/a	n/a
11	CEBPB	chr11:66534236-66534492	A549	lung:	n/a	chr11:66534358-66534369 chr11:66534360-66534369
12	CEBPB	chr11:66535476-66535858	HepG2	liver:	n/a	n/a
13	CEBPB	chr11:66516086-66516131	Hela-S3	cervix:	n/a	chr11:66516116-66516127
14	CEBPB	chr11:66535539-66535812	Hela-S3	cervix:	n/a	n/a
15	CEBPB	chr11:66532232-66532534	HepG2	liver:	n/a	chr11:66532389-66532400
16	CEBPB	chr11:66535600-66535777	IMR90	lung:	n/a	n/a
17	CEBPB	chr11:66535501-66535854	HepG2	liver:	n/a	n/a
18	CEBPB	chr11:66535531-66535711	H1-hESC	embryonic stem cell:	n/a	n/a
19	CEBPB	chr11:66535576-66535705	HepG2	liver:	n/a	n/a
20	CEBPB	chr11:66532202-66532584	MCF-7	breast:	n/a	chr11:66532389-66532400
21	CEBPB	chr11:66535514-66535816	HepG2	liver:	n/a	n/a
22	CEBPB	chr11:66532207-66532662	A549	lung:	n/a	chr11:66532389-66532400
23	CEBPB	chr11:66515969-66516115	K562	blood:	n/a	n/a
24	CEBPB	chr11:66532256-66532548	K562	blood:	n/a	chr11:66532389-66532400
25	CEBPB	chr11:66535506-66535837	A549	lung:	n/a	n/a
26	CEBPB	chr11:66532324-66532474	Hela-S3	cervix:	n/a	chr11:66532389-66532400
27	CEBPB	chr11:66535477-66535875	A549	lung:	n/a	n/a
28	CEBPB	chr11:66532163-66532531	MCF-7	breast:	n/a	chr11:66532389-66532400
29	CEBPB	chr11:66535425-66535910	MCF-7	breast:	n/a	n/a
30	CEBPB	chr11:66532303-66532514	A549	lung:	n/a	chr11:66532389-66532400
31	CEBPB	chr11:66532206-66532565	K562	blood:	n/a	chr11:66532389-66532400
32	CEBPB	chr11:66534231-66534466	Hela-S3	cervix:	n/a	chr11:66534358-66534369 chr11:66534360-66534369
33	CEBPB	chr11:66535415-66535866	A549	lung:	n/a	n/a
34	CEBPB	chr11:66534224-66534445	HepG2	liver:	n/a	chr11:66534358-66534369 chr11:66534360-66534369
35	CEBPB	chr11:66516542-66517221	MCF-7	breast:	n/a	n/a
36	CHD1	chr11:66568472-66568779	GM12878	blood:	n/a	n/a
37	CHD2	chr11:66568454-66568788	GM12878	blood:	n/a	n/a
38	CTCF	chr11:66562102-66562123	Hela-S3	cervix:	n/a	chr11:66562113-66562120
39	CTCF	chr11:66551362-66551414	Fibrobl	skin:	n/a	n/a
40	CTCF	chr11:66561900-66562050	GM12864	blood:	n/a	n/a
41	CTCF	chr11:66562000-66562150	HMEC	breast:	n/a	chr11:66562101-66562122 chr11:66562113-66562120
42	CTCF	chr11:66562080-66562230	GM12872	blood:	n/a	chr11:66562101-66562122 chr11:66562113-66562120
43	CTCF	chr11:66529880-66530030	GM12875	blood:	n/a	n/a
44	CTCF	chr11:66567055-66567128	Spleen_OC	spleen:	n/a	n/a
45	CTCF	chr11:66538015-66538067	GM20000	blood:	n/a	n/a
46	CTCF	chr11:66543980-66544062	GM13976	blood:	n/a	n/a
47	CTCF	chr11:66572989-66573106	GM13977	blood:	n/a	n/a
48	CTCF	chr11:66556380-66556530	Caco-2	colon:	n/a	n/a
49	CTCF	chr11:66564275-66564292	Medullo	brain:	n/a	n/a
50	CUX1	chr11:66542833-66542864	K562	blood:	n/a	n/a

(count:366 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:66532827-66532877	MCF10A-Er-Src	breast:	n/a
2	chr11:66532827-66532877	A549	lung:	n/a
3	chr11:66556756-66556806	SK-N-MC	brain:	n/a
4	chr11:66529822-66529872	SKMC	muscle:	n/a
5	chr11:66532827-66532877	AG10803	skin:	n/a
6	chr11:66556756-66556806	HCF	heart:	n/a
7	chr11:66556756-66556806	AG04450	lung:	fetal
8	chr11:66532827-66532877	HUVEC	blood vessel:	n/a
9	chr11:66529822-66529872	A549	lung:	n/a
10	chr11:66529885-66529935	SKMC	muscle:	n/a
11	chr11:66529657-66529707	K562	blood:	n/a
12	chr11:66529822-66529872	SK-N-SH_RA	brain:	n/a
13	chr11:66529657-66529707	AG04450	lung:	fetal
14	chr11:66556756-66556806	K562	blood:	n/a
15	chr11:66529822-66529872	H1-hESC	embryonic stem cell:	embryo
16	chr11:66529822-66529872	AoSMC	blood vessel:	n/a
17	chr11:66556756-66556806	ECC-1	luminal epithelium:	n/a
18	chr11:66530027-66530077	HRCEpiC	kidney:	n/a
19	chr11:66529885-66529935	NB4	blood:	n/a
20	chr11:66530027-66530077	HEK293	kidney:	embryo
21	chr11:66529657-66529707	AG04449	skin:	fetal
22	chr11:66532827-66532877	K562	blood:	n/a
23	chr11:66530027-66530077	HepG2	liver:	n/a
24	chr11:66556756-66556806	GM06990	blood:	n/a
25	chr11:66529885-66529935	HAEpiC	amniotic membrane:	n/a
26	chr11:66530027-66530077	HMEC	breast:	n/a
27	chr11:66532827-66532877	MCF-7	breast:	n/a
28	chr11:66556756-66556806	H1-hESC	embryonic stem cell:	embryo
29	chr11:66529822-66529872	ovcar-3	ovarian:	n/a
30	chr11:66532827-66532877	HMEC	breast:	n/a
31	chr11:66530027-66530077	AG10803	skin:	n/a
32	chr11:66529657-66529707	HRE	kidney:	n/a
33	chr11:66529885-66529935	HNPCEpiC	eye:	n/a
34	chr11:66532827-66532877	GM12878	blood:	n/a
35	chr11:66530027-66530077	AG04449	skin:	fetal
36	chr11:66530027-66530077	AoSMC	blood vessel:	n/a
37	chr11:66529885-66529935	MCF-7	breast:	n/a
38	chr11:66529885-66529935	Caco-2	colon:	n/a
39	chr11:66529822-66529872	ProgFib	skin:	n/a
40	chr11:66529885-66529935	ProgFib	skin:	n/a
41	chr11:66556756-66556806	AoSMC	blood vessel:	n/a
42	chr11:66529885-66529935	NT2-D1	testis:	n/a
43	chr11:66529657-66529707	NT2-D1	testis:	n/a
44	chr11:66529657-66529707	BE2_C	brain:	n/a
45	chr11:66529885-66529935	NH-A	brain:	n/a
46	chr11:66530027-66530077	RPTEC	kidney:	n/a
47	chr11:66530027-66530077	Jurkat	blood:	n/a
48	chr11:66556756-66556806	Caco-2	colon:	n/a
49	chr11:66529885-66529935	PANC-1	pancreas:	n/a
50	chr11:66529822-66529872	MCF10A-Er-Src	breast:	n/a

(count:76 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr11:66579464..66582168-chr11:66589333..66590935,2	K562	blood:
2	chr11:66560111..66562666-chr11:66609667..66611180,2	MCF-7	breast:
3	chr11:66510377..66514075-chr11:66555524..66560274,6	MCF-7	breast:
4	chr11:66552700..66555437-chr11:66561793..66564166,2	K562	blood:
5	chr11:66548712..66551794-chr11:66555818..66557613,3	MCF-7	breast:
6	chr11:66558348..66560113-chr11:66560242..66561873,2	MCF-7	breast:
7	chr11:66508922..66512626-chr11:66532752..66535976,6	MCF-7	breast:
8	chr11:66487345..66489431-chr11:66516687..66519374,2	MCF-7	breast:
9	chr11:66510399..66513984-chr11:66514064..66517719,8	MCF-7	breast:
10	chr11:66547037..66549500-chr11:66623406..66625731,2	MCF-7	breast:
11	chr11:66493861..66498185-chr11:66524704..66529486,4	K562	blood:
12	chr11:66541155..66543046-chr11:66609281..66612038,2	MCF-7	breast:
13	chr11:66574478..66577708-chr11:66578094..66581099,3	K562	blood:
14	chr11:66575889..66578334-chr11:66585490..66587364,2	MCF-7	breast:
15	chr11:66510952..66514202-chr11:66524904..66528064,3	K562	blood:
16	chr11:66568727..66571810-chr11:66574356..66577188,3	K562	blood:
17	chr11:66569000..66571813-chr11:66578952..66581686,2	MCF-7	breast:
18	chr11:66548577..66550340-chr11:66557886..66559451,2	MCF-7	breast:
19	chr11:66516509..66519400-chr11:66611915..66614317,2	MCF-7	breast:
20	chr11:66569721..66572072-chr11:66573135..66575374,3	MCF-7	breast:
21	chr11:66548712..66551794-chr11:66555818..66557613,3	MCF-7	breast:
22	chr11:66505646..66507981-chr11:66558837..66561189,2	K562	blood:
23	chr11:66382727..66385338-chr11:66531188..66533920,2	MCF-7	breast:
24	chr11:66477252..66478002-chr11:66516349..66517231,4	MCF-7	breast:
25	chr11:66514864..66517821-chr11:66520272..66522038,2	K562	blood:
26	chr11:66576228..66577735-chr11:66577964..66579667,2	MCF-7	breast:
27	chr11:66492557..66494954-chr11:66515983..66517531,2	K562	blood:
28	chr11:66461871..66464814-chr11:66542647..66544516,2	K562	blood:
29	chr11:66531006..66534192-chr11:66534200..66538203,4	K562	blood:
30	chr11:66462291..66465179-chr11:66576838..66578973,2	MCF-7	breast:
31	chr11:66576228..66577735-chr11:66577964..66579667,2	MCF-7	breast:
32	chr11:66488638..66490543-chr11:66560462..66562058,2	MCF-7	breast:
33	chr11:66511430..66516575-chr11:66550719..66554900,5	MCF-7	breast:
34	chr11:66550222..66552472-chr11:66552736..66554855,2	K562	blood:
35	chr11:66531067..66535329-chr11:66536471..66539126,4	K562	blood:
36	chr11:66528906..66530759-chr11:66532545..66534201,2	MCF-7	breast:
37	chr11:66511244..66515622-chr11:66520055..66525870,6	MCF-7	breast:
38	chr11:66137431..66139423-chr11:66559260..66561220,2	MCF-7	breast:
39	chr11:66515358..66517711-chr11:66557412..66560758,4	MCF-7	breast:
40	chr11:66531067..66535329-chr11:66536471..66539126,4	K562	blood:
41	chr11:66495562..66497940-chr11:66534176..66536723,2	K562	blood:
42	chr11:66561937..66563631-chr11:66581137..66583899,2	MCF-7	breast:
43	chr11:66534456..66536238-chr11:66540459..66542378,3	K562	blood:
44	chr11:66502009..66503627-chr11:66558147..66560274,2	K562	blood:
45	chr11:66512224..66514552-chr11:66553002..66555339,3	K562	blood:
46	chr11:66511594..66513264-chr11:66537136..66539617,2	MCF-7	breast:
47	chr11:66526435..66528204-chr11:66529926..66531450,2	MCF-7	breast:
48	chr11:66550222..66552472-chr11:66552736..66554855,2	K562	blood:
49	chr11:66443889..66446824-chr11:66516864..66518382,2	MCF-7	breast:
50	chr11:66485898..66488789-chr11:66548912..66551207,2	MCF-7	breast:

(count:10 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RCE1-1	chr11:66568112-66568167	NONHSAT022353
2	lnc-RCE1-1	chr11:66571466-66571639	NONHSAT022353
3	lnc-SPTBN2-4	chr11:66538717-66539138	NONHSAT022352
4	lnc-RCE1-1	chr11:66563368-66563835	NONHSAT022353
5	lnc-RCE1-1	chr11:66526514-66526567	NONHSAT022351
6	lnc-RCE1-1	chr11:66563752-66563835	NONHSAT022351
7	lnc-RCE1-1	chr11:66568112-66568157	NONHSAT022351
8	lnc-RCE1-1	chr11:66555631-66555740	NONHSAT022351
9	lnc-RCE1-1	chr11:66568502-66568573	NONHSAT022353
10	lnc-RCE1-1	chr11:66529550-66529921	NONHSAT022351

No data

Variant related genes	Relation type
ENSG00000213409	TF binding region
FTLP6	TF binding region
C11orf80	TF binding region
ENSG00000213409	CpG island
FTLP6	CpG island
C11orf80	CpG island
ENSG00000173715	chromatin interactions
ENSG00000173914	chromatin interactions
ENSG00000248643	chromatin interactions
ENSG00000213409	chromatin interactions
ENSG00000173621	chromatin interactions
ENSG00000254984	chromatin interactions
ENSG00000174669	chromatin interactions
ENSG00000199325	chromatin interactions
ENSG00000173898	chromatin interactions
ENSG00000239306	chromatin interactions
ENSG00000173653	chromatin interactions

Extended variants
information (count: 2132 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:2132 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs3782079	chr11:66516049-66516050	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs570549860	chr11:66516071-66516072	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
3	rs181246052	chr11:66516099-66516100	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
4	rs552832584	chr11:66516126-66516127	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
5	rs186073898	chr11:66516195-66516196	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
6	rs11227584	chr11:66516230-66516231	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
7	rs138326700	chr11:66516259-66516260	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
8	rs515829	chr11:66516293-66516294	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
9	rs534485526	chr11:66516322-66516323	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
10	rs199719581	chr11:66516360-66516361	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
11	rs683043	chr11:66516396-66516397	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
12	rs77163579	chr11:66516439-66516440	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
13	rs190931646	chr11:66516480-66516481	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
14	rs575207636	chr11:66516491-66516492	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
15	rs183958144	chr11:66516508-66516509	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
16	rs544240644	chr11:66516519-66516520	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
17	rs144005746	chr11:66516520-66516521	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
18	rs369066762	chr11:66516549-66516550	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
19	rs141469501	chr11:66516702-66516703	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
20	rs186099093	chr11:66516764-66516765	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
21	rs190516072	chr11:66516765-66516766	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
22	rs183056236	chr11:66516766-66516767	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
23	rs117367167	chr11:66516779-66516780	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
24	rs187342382	chr11:66516805-66516806	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
25	rs192770685	chr11:66516808-66516809	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
26	rs145169166	chr11:66516811-66516812	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
27	rs567960118	chr11:66516827-66516828	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
28	rs138789048	chr11:66516838-66516839	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
29	rs535352645	chr11:66516842-66516843	Weak transcription Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
30	rs537123086	chr11:66516865-66516866	Weak transcription Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
31	rs550640738	chr11:66516877-66516878	Weak transcription Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
32	rs75751830	chr11:66516879-66516880	Weak transcription Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
33	rs539439976	chr11:66516909-66516910	Weak transcription Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
34	rs141981059	chr11:66516962-66516963	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
35	rs573006393	chr11:66516979-66516980	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs535647325	chr11:66516987-66516988	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs76345982	chr11:66517005-66517006	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs143692718	chr11:66517087-66517088	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs544350045	chr11:66517097-66517098	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs571198918	chr11:66517202-66517203	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs375428589	chr11:66517203-66517204	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs564152067	chr11:66517209-66517210	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs577750882	chr11:66517210-66517211	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs540190981	chr11:66517223-66517224	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs560007420	chr11:66517232-66517233	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs528747472	chr11:66517241-66517242	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs548787584	chr11:66517319-66517320	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs115290875	chr11:66517329-66517330	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs373725815	chr11:66517358-66517359	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs568947713	chr11:66517361-66517362	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	21138945	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	21080181	CNVD
Smith-Lemli-Opitz syndrome	21572526	CNVD
Multiple myeloma	16461302	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Metanephric adenoma	20802469	CNVD
Chordoma	21602918	CNVD
Melanoma	18172304	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
ovarian endometriomas	16273235	CNVD
Breast cancer	16417655	CNVD
Myelofibrosis	22110671	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	17217626	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	21045282	CNVD
Breast cancer	21806811	CNVD
Breast cancer	22002566	CNVD
Ductal carcinoma	18381933	CNVD
Retinoblastoma	22278416	CNVD
Breast cancer	20953835	CNVD
oto-dental syndrome	17656375	CNVD
Asthma	21956041	CNVD
Breast cancer	17603634	CNVD
Ovarian neoplasms	16753589	CNVD
Non-small cell lung cancer	20864512	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21509527	CNVD
Breast cancer	17001317	CNVD
Oral squamous cell carcinoma	16619035	CNVD
Intracranial aneurysm	16715129	CNVD
Colorectal cancer	16272173	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Colorectal cancer	16882699	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668395	CNVD
Spinal muscular atrophy	17668395	CNVD
Neonatal seizures	17668395	CNVD
Neonatal seizures	17668391	CNVD
Neuroticism	17667963	CNVD
Cancer	17916600	CNVD
Squamous cell cancer	19047905	CNVD
Multiple endocrine neoplasia type 1	19566914	CNVD
XY sex reversal	17503084	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668391	CNVD
Maculopathy	17646752	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute myeloid leukemia	21251322	CNVD
Lung cancer	19153074	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:535 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66513000-66529000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:66513200-66517600	Weak transcription	Thymus	Thymus
3	chr11:66513200-66521400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:66513200-66526600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:66513200-66527600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:66513200-66530800	Weak transcription	HSMMtube	muscle
7	chr11:66513200-66541200	Weak transcription	Aorta	Aorta
8	chr11:66513200-66555000	Weak transcription	Pancreas	Pancrea
9	chr11:66513400-66516400	Weak transcription	NHEK	skin
10	chr11:66513400-66526200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:66513400-66527200	Weak transcription	Fetal Thymus	thymus
12	chr11:66513400-66528000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:66513400-66528800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:66513400-66529600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:66513400-66531600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr11:66513400-66540800	Weak transcription	Spleen	Spleen
17	chr11:66513400-66547800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:66513400-66606800	Weak transcription	Brain Angular Gyrus	brain
19	chr11:66513600-66526600	Weak transcription	Primary B cells from peripheral blood	blood
20	chr11:66513600-66527000	Weak transcription	Fetal Intestine Small	intestine
21	chr11:66513600-66527600	Weak transcription	Fetal Stomach	stomach
22	chr11:66513600-66528000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:66513600-66529000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr11:66513600-66529000	Weak transcription	Fetal Intestine Large	intestine
25	chr11:66513600-66530400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:66513600-66532600	Weak transcription	Colonic Mucosa	Colon
27	chr11:66513600-66538800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr11:66513800-66523200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr11:66513800-66526000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:66513800-66527800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr11:66513800-66528200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:66513800-66529200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr11:66513800-66539800	Weak transcription	GM12878-XiMat	blood
34	chr11:66514400-66530400	Weak transcription	Primary B cells from cord blood	blood
35	chr11:66515400-66516600	Enhancers	HUVEC	blood vessel
36	chr11:66515400-66516800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr11:66515400-66527000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:66515400-66527800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:66515400-66529000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:66515400-66529200	Weak transcription	Esophagus	oesophagus
41	chr11:66515400-66529200	Weak transcription	NHDF-Ad	bronchial
42	chr11:66515400-66529600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:66515400-66529800	Weak transcription	Brain Germinal Matrix	brain
44	chr11:66515400-66535800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:66515600-66516400	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr11:66515600-66516400	Weak transcription	Fetal Brain Male	brain
47	chr11:66515600-66529000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:66515600-66529200	Weak transcription	Fetal Brain Female	brain
49	chr11:66515800-66516200	Weak transcription	HMEC	breast
50	chr11:66515800-66516800	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links