Variant report

Variant	rs183056236
Chromosome Location	chr11:66516766-66516767
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66477252..66477887-chr11:66516349..66517041,2	MCF-7	breast:
2	chr11:66516321..66518946-chr11:66520538..66522325,2	K562	blood:
3	chr11:66492557..66494954-chr11:66515983..66517531,2	K562	blood:
4	chr11:66382524..66385340-chr11:66511920..66516933,5	MCF-7	breast:
5	chr11:66516509..66519400-chr11:66611915..66614317,2	MCF-7	breast:
6	chr11:66477252..66478002-chr11:66516349..66517231,4	MCF-7	breast:
7	chr11:66487345..66489431-chr11:66516687..66519374,2	MCF-7	breast:
8	chr11:66510399..66513984-chr11:66514064..66517719,8	MCF-7	breast:
9	chr11:66462840..66465685-chr11:66516258..66519053,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000248643	Chromatin interaction
ENSG00000173898	Chromatin interaction
ENSG00000173715	Chromatin interaction
ENSG00000239306	Chromatin interaction
ENSG00000199325	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897789	chr11:66372390-66634397	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	nsv897790	chr11:66414915-66626234	Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv897791	chr11:66442855-66533469	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv427891	chr11:66456140-66606701	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv468602	chr11:66468469-66634397	Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
6	nsv555225	chr11:66468469-66634397	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	nsv897792	chr11:66486143-66529101	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
8	nsv897793	chr11:66486143-66533469	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
9	esv1798614	chr11:66514847-66535177	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv516087	chr11:66516049-66579572	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66513000-66529000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:66513200-66517600	Weak transcription	Thymus	Thymus
3	chr11:66513200-66521400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:66513200-66526600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:66513200-66527600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:66513200-66530800	Weak transcription	HSMMtube	muscle
7	chr11:66513200-66541200	Weak transcription	Aorta	Aorta
8	chr11:66513200-66555000	Weak transcription	Pancreas	Pancrea
9	chr11:66513400-66526200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:66513400-66527200	Weak transcription	Fetal Thymus	thymus
11	chr11:66513400-66528000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:66513400-66528800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr11:66513400-66529600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:66513400-66531600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:66513400-66540800	Weak transcription	Spleen	Spleen
16	chr11:66513400-66547800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr11:66513400-66606800	Weak transcription	Brain Angular Gyrus	brain
18	chr11:66513600-66526600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr11:66513600-66527000	Weak transcription	Fetal Intestine Small	intestine
20	chr11:66513600-66527600	Weak transcription	Fetal Stomach	stomach
21	chr11:66513600-66528000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:66513600-66529000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr11:66513600-66529000	Weak transcription	Fetal Intestine Large	intestine
24	chr11:66513600-66530400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:66513600-66532600	Weak transcription	Colonic Mucosa	Colon
26	chr11:66513600-66538800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:66513800-66523200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:66513800-66526000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:66513800-66527800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr11:66513800-66528200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr11:66513800-66529200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr11:66513800-66539800	Weak transcription	GM12878-XiMat	blood
33	chr11:66514400-66530400	Weak transcription	Primary B cells from cord blood	blood
34	chr11:66515400-66516800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:66515400-66527000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:66515400-66527800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:66515400-66529000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:66515400-66529200	Weak transcription	Esophagus	oesophagus
39	chr11:66515400-66529200	Weak transcription	NHDF-Ad	bronchial
40	chr11:66515400-66529600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:66515400-66529800	Weak transcription	Brain Germinal Matrix	brain
42	chr11:66515400-66535800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:66515600-66529000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:66515600-66529200	Weak transcription	Fetal Brain Female	brain
45	chr11:66515800-66516800	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr11:66516000-66516800	Weak transcription	Hela-S3	cervix
47	chr11:66516000-66528800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:66516200-66516800	Enhancers	HMEC	breast
49	chr11:66516400-66516800	Enhancers	Fetal Brain Male	brain
50	chr11:66516400-66517000	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links